PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00010504-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GeBP
Protein Properties Length: 402aa    MW: 44433 Da    PI: 4.5415
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00010504-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573121.83.3e-38108203297
              DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                         lfqrlw++eDei lLqG++d+++++g+  ++d+  fy+++k++++++++k+qlveK+rrLKkK+++  +k++ gk++sf+++hdq +fe+s
  WALNUT_00010504-RA 108 LFQRLWTDEDEIELLQGFLDYTTSRGSTHHNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVLAKSSAGKDVSFKSPHDQATFEIS 198
                         79***************************************************************************************** PP

              DUF573  93 kkiWg 97 
                         +kiW+
  WALNUT_00010504-RA 199 RKIWR 203
                         ****7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.6E-35109202IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MASEQDDTVF PEEDLDDELS DGEEDDDDED DEDDDVINSA SPSTSSPAAN SVTVALPASS  60
LPIGDPPIAT SSIATAAAAT TMVTPSPKRH PTDPQEKKPQ PLDDSRRLFQ RLWTDEDEIE  120
LLQGFLDYTT SRGSTHHNDT ALFYDQIKSK LQLDFNKNQL VEKLRRLKKK YRNVLAKSSA  180
GKDVSFKSPH DQATFEISRK IWRNDDHNTG RFAVDDSVFD DEDPNVKTPT FNFNNYEEIG  240
EKKMISTPRS RKRPRSQSQS QLQPQPQPQP VYRSEEKRIS SQADIKVNGN DSINQSNLGG  300
LIEETVRSCL SPLFKELLSN AMGAGGRGIG FGFGGLGMNA MATNVIPLSF AGGGGGGVGG  360
EGVVDERWRK QQILELEVYS KRLELVQDQI RAALDELRSV GR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ3188261e-114JQ318826.1 Morella rubra microsatellite ZJU131 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018824949.10.0PREDICTED: probable transcription factor At3g04930
TrEMBLA0A2I4EZY20.0A0A2I4EZY2_JUGRE; probable transcription factor At3g04930
STRINGXP_009364550.11e-120(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.13e-71DNA-binding storekeeper protein-related transcriptional regulator