PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00010464-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | G2-like | ||||||||
Protein Properties | Length: 318aa MW: 34844.1 Da PI: 6.8844 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.9 | 5.4e-34 | 45 | 99 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl WALNUT_00010464-RA 45 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 99 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.485 | 42 | 102 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-32 | 44 | 100 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.06E-18 | 44 | 99 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-25 | 45 | 100 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-9 | 47 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 8.6E-11 | 131 | 167 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MYQPKSVHNS SLFQKNSLVH GQHLDCVMDP ISGGNGHDNA SLASKQRLRW THELHERFVD 60 AVAQLGGPDR ATPKGVLRVM GVQGLTIYHV KSHLQKYRLA KYLPDSSSDG KKADKKETGD 120 MLSSLDGSSG MQINEALKLQ MEVQRQLQLR IEAQGKYLKK IIEEQQRFGV LSETSGSGVP 180 GPASGDNCPD SDIKTDPATP APTSEGPLQD KAAKECAPAS LSIDESFSSH HEPLTPDSGC 240 HLSSPAESPK GERLIKKQRV LVGGAYAKPE MVLPHQILES SCISYQQQHS IFLSREQFEP 300 SSDVSIRNED HMEKFGPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-24 | 45 | 102 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-24 | 45 | 102 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-24 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-24 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-24 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-24 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-24 | 45 | 102 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-24 | 45 | 102 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-24 | 45 | 102 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-24 | 45 | 102 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-24 | 45 | 102 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-24 | 45 | 102 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018828006.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like isoform X1 | ||||
Refseq | XP_018828007.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like isoform X1 | ||||
Swissprot | Q9SJW0 | 1e-119 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A2I4F8N1 | 0.0 | A0A2I4F8N1_JUGRE; myb family transcription factor PHL7-like isoform X1 | ||||
STRING | VIT_00s0475g00040.t01 | 1e-176 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8610 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 1e-101 | G2-like family protein |