PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00010348-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NAC
Protein Properties Length: 448aa    MW: 50013.1 Da    PI: 9.1112
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00010348-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM50.47.1e-162673149
                 NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49
                        + pGfrF+Ptd el+++yL+kkveg++ ++ evi+evd+y +ePwdLp 
  WALNUT_00010348-RA 26 MFPGFRFSPTDVELISFYLQKKVEGSDKRV-EVISEVDMYGYEPWDLPG 73
                        579************************999.99**************94 PP
2NAM89.27.1e-2813621152128
                 NAM  52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++++ew+fFs+r +kya+g +++r+t+ gyWkatgk ++v+s + e +g+k+tLvf+kgrapkge+t+W+mhey +
  WALNUT_00010348-RA 136 IQSDNEWFFFSPRGRKYANGLQSRRTTELGYWKATGKGRNVKS-GPEMIGTKRTLVFHKGRAPKGERTEWIMHEYCM 211
                         45789**************************************.999****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-162175IPR003441NAC domain
PROSITE profilePS5100543.74126227IPR003441NAC domain
PfamPF023659.1E-2328210IPR003441NAC domain
SuperFamilySSF1019416.41E-31136226IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MEVPSGETEI EGISKQAKIL ITASTMFPGF RFSPTDVELI SFYLQKKVEG SDKRVEVISE  60
VDMYGYEPWD LPGWFVASLG TYITLLFLSF FCKYAVLGYI SHLYILVKFL LTTTLVLNGL  120
GYSLLWVYLQ TAKSVIQSDN EWFFFSPRGR KYANGLQSRR TTELGYWKAT GKGRNVKSGP  180
EMIGTKRTLV FHKGRAPKGE RTEWIMHEYC MDGISQDTLV VCQLRKNSGF HLNDSSNRAS  240
SRQRNLLTLP SINHAVSKVG IEELGLSKGG EAVGRSHDSY SNNQTDSTAE YDQKLTNVAA  300
MAETSSHQKG AGIEEDLYAE ILRDDIVKLD ESSSSVTPRP LPVMTRAEGV AQQPIQEIAA  360
RGLPLQGRAN SRIKPRMKKA RVFPADASKL LETGEDENPN QEQPPKYPLG RFSLRTSNHW  420
RASLLFVILT SLALFVSLLG GSRCKLEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-2013922770165NO APICAL MERISTEM PROTEIN
1ut4_B7e-2013922770165NO APICAL MERISTEM PROTEIN
1ut7_A7e-2013922770165NO APICAL MERISTEM PROTEIN
1ut7_B7e-2013922770165NO APICAL MERISTEM PROTEIN
3swm_A7e-2013922773168NAC domain-containing protein 19
3swm_B7e-2013922773168NAC domain-containing protein 19
3swm_C7e-2013922773168NAC domain-containing protein 19
3swm_D7e-2013922773168NAC domain-containing protein 19
3swp_A7e-2013922773168NAC domain-containing protein 19
3swp_B7e-2013922773168NAC domain-containing protein 19
3swp_C7e-2013922773168NAC domain-containing protein 19
3swp_D7e-2013922773168NAC domain-containing protein 19
4dul_A7e-2013922770165NAC domain-containing protein 19
4dul_B7e-2013922770165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018829747.10.0PREDICTED: NAC domain-containing protein 60-like
TrEMBLA0A2I4FDM70.0A0A2I4FDM7_JUGRE; NAC domain-containing protein 60-like
STRINGXP_006481513.16e-92(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73153346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44290.12e-55NAC domain containing protein 60