PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00010276-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bZIP
Protein Properties Length: 431aa    MW: 46212.1 Da    PI: 7.3908
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00010276-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.84.2e-22286348163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkrerrkq+NRe+ArrsR+RK+ae+eeL+ kv++L+aeN+a k+e+  l+++++klk e+
  WALNUT_00010276-RA 286 ERELKRERRKQSNRESARRSRLRKQAETEELALKVDSLTAENTAIKSEIGLLTENSDKLKLEN 348
                         89**********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.1E-386102IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165964.4E-25134265No hitNo description
Gene3DG3DSA:1.20.5.1705.1E-16279345No hitNo description
SMARTSM003385.3E-21286350IPR004827Basic-leucine zipper domain
PfamPF001702.2E-20286348IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.564288351IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.56E-10289345No hitNo description
CDDcd147029.91E-19291339No hitNo description
PROSITE patternPS000360293308IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MDERSMGNNE EGKSTKSEKS SSPVTPDQTN QTNIHVYPDW AAMQAYYGPR VTLPPYYNST  60
VTSGHAPHPY MWGPPQPMMP PYGAPYAAIY PHGGVYAHPA VPLGSHSHGQ GVPLSPAAVT  120
PLSIETPTKS GNTDRGLMKK LKEFDGLAMS IGNGTAESAD GGAEHRLSQS SETDGSSDGS  180
DGNTARPNQT RRKRSRDGTP TGSEGKTEMQ ASHTSAKEVS VAPNKTSGAT VTPGSVSGNL  240
VGSVVSPGMA TALELRNTSN INTKTTTTSV PQSCSVLPSE AWMPNERELK RERRKQSNRE  300
SARRSRLRKQ AETEELALKV DSLTAENTAI KSEIGLLTEN SDKLKLENAK LMEKLKNAQL  360
GQTEEIILNR IEDKRALPVS TENLLSRVNN SGAVDRSTEE KSDMYENSSN SGAKLHQLLD  420
TSPRADAVAA G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302308RRSRLRK
2302309RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018827913.10.0PREDICTED: common plant regulatory factor 1-like isoform X2
SwissprotQ990891e-147CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A2I4F8E00.0A0A2I4F8E0_JUGRE; common plant regulatory factor 1-like isoform X2
STRINGEMJ192540.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53013455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.13e-97G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]