PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00010203-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | Dof | ||||||||
Protein Properties | Length: 296aa MW: 32451.1 Da PI: 7.6735 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 129 | 1.3e-40 | 26 | 87 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss WALNUT_00010203-RA 26 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 87 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-27 | 24 | 79 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.5E-34 | 28 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.646 | 30 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 32 | 68 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MPAHMLENMM VCLKAQPDQR KPRPQPEQAL KCPRCDSTNT KFCYYNNYSL SQPRYFCKSC 60 RRYWTKGGTL RNVPVGGGCR KNKRSSSSSS KRSQDQPLTP NTNPLGSLPS LSYDSPNDLS 120 LAFARLQKQS CGHELGFDDH EFQMGNAAAT HFDLLGNPAG MNGSANTTPP GFLGSLRNGF 180 LDSQNIFPNF YYGYNDNVNM GEADNGTGGG VVGVSGEMAL PYEEMSNAAT TTAVTVTTMK 240 QEFCNGRSEN DQNRVLWGFP WQLNGNGNMA DLDSGRESWN NGAAPSWHGL INSPLL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018818901.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.1-like isoform X1 | ||||
TrEMBL | A0A2I4EHM5 | 0.0 | A0A2I4EHM5_JUGRE; dof zinc finger protein DOF2.1-like isoform X1 | ||||
STRING | XP_002532252.1 | 1e-121 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5026 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28510.1 | 3e-41 | Dof family protein |