PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00010203-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Dof

Protein Properties

Length: 296aa MW: 32451.1 Da PI: 7.6735

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00010203-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	129	1.3e-40	26	87	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss WALNUT_00010203-RA 26 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 87 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-27	24	79	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.5E-34	28	84	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.646	30	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MPAHMLENMM VCLKAQPDQR KPRPQPEQAL KCPRCDSTNT KFCYYNNYSL SQPRYFCKSC 60 RRYWTKGGTL RNVPVGGGCR KNKRSSSSSS KRSQDQPLTP NTNPLGSLPS LSYDSPNDLS 120 LAFARLQKQS CGHELGFDDH EFQMGNAAAT HFDLLGNPAG MNGSANTTPP GFLGSLRNGF 180 LDSQNIFPNF YYGYNDNVNM GEADNGTGGG VVGVSGEMAL PYEEMSNAAT TTAVTVTTMK 240 QEFCNGRSEN DQNRVLWGFP WQLNGNGNMA DLDSGRESWN NGAAPSWHGL INSPLL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018818901.1	0.0	PREDICTED: dof zinc finger protein DOF2.1-like isoform X1
TrEMBL	A0A2I4EHM5	0.0	A0A2I4EHM5_JUGRE; dof zinc finger protein DOF2.1-like isoform X1
STRING	XP_002532252.1	1e-121	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5026	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	3e-41	Dof family protein