PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00010141-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family CO-like
Protein Properties Length: 345aa    MW: 37978.1 Da    PI: 6.6139
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00010141-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.53.1e-09443437
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                        + C+ +++  ++lfC+ ++ +lC  C +e+H        H
  WALNUT_00010141-RA  4 KLCDSCKSATATLFCRADSAFLCVGCDSEIHAAnklasrH 43
                        58*****************************554455555 PP
2zf-B_box25.33.2e-084691342
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                         + C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  WALNUT_00010141-RA 46 VWLCEVCEHAPAHVTCKADAAALCVTCDRDIHSAnplasrHERVPV 91
                        679*****************************66999999999986 PP
3CCT70.15.8e-24284328145
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                         Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++e
  WALNUT_00010141-RA 284 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSE 328
                         9*****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.1E-14148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.765148IPR000315B-box-type zinc finger
PfamPF006432.4E-6443IPR000315B-box-type zinc finger
CDDcd000211.76E-8548No hitNo description
PROSITE profilePS5011910.6234491IPR000315B-box-type zinc finger
PfamPF006431.5E-64691IPR000315B-box-type zinc finger
CDDcd000214.10E-84791No hitNo description
SMARTSM003362.1E-104991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.787284326IPR010402CCT domain
PfamPF062035.1E-18284326IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MASKLCDSCK SATATLFCRA DSAFLCVGCD SEIHAANKLA SRHARVWLCE VCEHAPAHVT  60
CKADAAALCV TCDRDIHSAN PLASRHERVP VTPFYDSVKA GAAANFLHDD YLSDVEGDDD  120
VSREEAEAAS WLLPNPPSNN HHSHNNNNNN KVMENPDLNT GQYVFPDMDP YLNLDYGPVD  180
PKSEAQEQNS SGTDRVVPVR SKSVHQPPLM SDHHCFDMDF SGSKPYVYGY NGQCLSHSVS  240
SSSLDVGVVP DGSTVTDVSD SYCKPMGTVS DSANRAVQIS AADREARVLR YREKRKNRKF  300
EKTIRYASRK AYAETRPRIK GRFAKRSEMG SEVDRTCGYG VVPSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018833641.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 4-like
RefseqXP_018833642.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 4-like
SwissprotQ940T91e-139COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A2I4FPT20.0A0A2I4FPT2_JUGRE; zinc finger protein CONSTANS-LIKE 4-like
STRINGcassava4.1_011192m1e-172(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-134CONSTANS-like 4