PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00010124-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 268aa    MW: 29724.1 Da    PI: 4.7614
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00010124-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.23e-13205250655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  WALNUT_00010124-RA 205 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKFLQ 250
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.958199249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-16202259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.45E-13203254No hitNo description
Gene3DG3DSA:4.10.280.101.3E-15204256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-13205255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-10205250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MQPTLPGTSG STGGSELSRG RLPRFRSAPA TWLEALLEEE EDEEDDEDPL KPNLTLTQLL  60
AASNSCTPTP TSRQDSATFT SSSVDPGHFD SGSPPVFFRQ NSSPAQFLGN SGVRPEGYFS  120
NFGIPPNYNY VSHNIDTPPG SKRTREVEAQ NLTAAKFPSQ LKEEQSSQGP AGEDSLIDME  180
MERLLEDSVP CRVRAKRGCA THPRSIAERV RRTRISDRIR KLQELVPNMD KQTNTADMLE  240
EAVEYVKFLQ KQIQVLPALS YFESLMSI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018833612.10.0PREDICTED: transcription factor bHLH80-like
RefseqXP_018833613.10.0PREDICTED: transcription factor bHLH80-like
RefseqXP_018833615.10.0PREDICTED: transcription factor bHLH80-like
RefseqXP_018833616.10.0PREDICTED: transcription factor bHLH80-like
SwissprotQ9C8P89e-90BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A2I4FPN00.0A0A2I4FPN0_JUGRE; transcription factor bHLH80-like
STRINGEOY173212e-90(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.12e-78bHLH family protein