PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00009970-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | FAR1 | ||||||||
Protein Properties | Length: 247aa MW: 27256.1 Da PI: 9.24 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 30.5 | 1.2e-09 | 113 | 173 | 2 | 66 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkakl 66 +Y++YAk+ GF v++ ++k++ +g+ + t C + g+ ++++++ +r+r++t+t+Ckak WALNUT_00009970-RA 113 YYKRYAKQSGFGVKTFRTKRE-ADGSAKYLTIGCARGGTYHPSHSN---VSRPRPTTKTNCKAKT 173 8*************9998887.8999****************9988...999***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.5E-7 | 113 | 173 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MLVLFEVYIS HPTHFLSPPF PPLPFPSQPP RPYPTHLVIS PIPCIVQKAP SPASDGSPYL 60 LPLIFPLPAF SRKLLPIPVR ASSSPTVSDD DDERVEEPKS GMEFSTEKDL LAYYKRYAKQ 120 SGFGVKTFRT KREADGSAKY LTIGCARGGT YHPSHSNVSR PRPTTKTNCK AKTCRKIFND 180 EEQLHAGLES AGVAIVDNFV VGTQYSDVIQ PTPSGNEEKC AGTDHKSNGY KMGSLAHLPK 240 KYFAYLK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13793 | 7 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 3e-08 | FAR1 family protein |