PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00009930-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ZF-HD | ||||||||
Protein Properties | Length: 243aa MW: 26895.9 Da PI: 7.2028 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104 | 9.7e-33 | 54 | 108 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 + rY+eClkNhA+ +Ggha+DGCgEfmp+ g+egt +alkCaAC+CHRnFHR+e++ WALNUT_00009930-RA 54 RPRYRECLKNHAVGIGGHALDGCGEFMPA-GAEGTLDALKCAACNCHRNFHRKETD 108 679*************************9.999********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.0E-29 | 56 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.7E-30 | 56 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-21 | 56 | 108 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.576 | 57 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.9E-19 | 171 | 241 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.8E-32 | 171 | 242 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.6E-25 | 180 | 236 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MEFEEQEEHE EEMELDGTRY DSLGNSGRFK IQSSGGGGGG GPDLAVAQQQ QTKRPRYREC 60 LKNHAVGIGG HALDGCGEFM PAGAEGTLDA LKCAACNCHR NFHRKETDLH VGVGSADPYQ 120 QVPNHPQFSP YYRTPAGYLH VAPQLHRPLA LPSTSGGHSG DDQEEDVSNP SGGLGGSVSK 180 KRFRTKFTQE QKDRMLELAE RLGWRLQKHD EAVVQQFCNE TGVKRHVLKV WMHNNKHTLG 240 KKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-26 | 179 | 238 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018830269.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 1-like | ||||
Swissprot | Q6YXH5 | 1e-85 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A2I4FF48 | 0.0 | A0A2I4FF48_JUGRE; zinc-finger homeodomain protein 1-like | ||||
STRING | EMJ06891 | 1e-108 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-72 | homeobox protein 22 |
Publications ? help Back to Top | |||
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