PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00009899-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | C3H | ||||||||
Protein Properties | Length: 445aa MW: 48389 Da PI: 8.0445 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.4 | 3.3e-10 | 48 | 73 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG++C+++H+ WALNUT_00009899-RA 48 PGEPDCLYYLRTGLCGYGSNCRYNHP 73 5789*********************8 PP | |||||||
2 | zf-CCCH | 36.4 | 8.8e-12 | 92 | 116 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ WALNUT_00009899-RA 92 QPDCGYFLKTGTCKYGSTCKYHHPR 116 789********************96 PP | |||||||
3 | zf-CCCH | 37 | 5.8e-12 | 138 | 161 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+++++tG Ck+G CkF+H++ WALNUT_00009899-RA 138 KQCSYYMQTGLCKFGVACKFHHPQ 161 67********************97 PP | |||||||
4 | zf-CCCH | 41.8 | 1.8e-13 | 284 | 309 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ tGtCkyG+ CkF+H++ WALNUT_00009899-RA 284 DQPECRYFMNTGTCKYGSDCKFHHPK 309 689*********************96 PP | |||||||
5 | zf-CCCH | 35.4 | 1.9e-11 | 327 | 351 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++++ +G CkyG++CkF H+ WALNUT_00009899-RA 327 GQAVCSYYSMYGLCKYGPTCKFDHP 351 7899********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.253 | 47 | 75 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-5 | 47 | 74 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.0E-8 | 49 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-5 | 52 | 73 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 0.001 | 53 | 72 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.737 | 89 | 117 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-5 | 89 | 116 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-9 | 92 | 116 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 93 | 118 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-4 | 95 | 116 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.28E-6 | 133 | 162 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.554 | 134 | 162 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.3E-4 | 136 | 161 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-9 | 137 | 161 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 139 | 160 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.699 | 282 | 310 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.5E-6 | 282 | 309 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.1E-11 | 284 | 309 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-7 | 285 | 311 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-6 | 288 | 309 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-6 | 324 | 351 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.76 | 325 | 353 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.4E-7 | 325 | 352 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-8 | 327 | 351 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-4 | 330 | 350 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MPDNRQVQKN ATPNQSANPI EEAFWRLKIN DNQEGDGAAQ SAPYPDRPGE PDCLYYLRTG 60 LCGYGSNCRY NHPSYVSQGS LYSVELPERV GQPDCGYFLK TGTCKYGSTC KYHHPRDRRG 120 AGPVSFNVVG LPMRQEEKQC SYYMQTGLCK FGVACKFHHP QPASLGTVLP VTGHADVGSM 180 GSTVMPSSGL PYTGGLPAWS LPRVPYISGP RFPGPETYMP AFLPQGIVPA QGWNTYMGNM 240 NPMSPNGSTA VLYSNFIYNS KNLGESASRG LSSGTTASLP ERPDQPECRY FMNTGTCKYG 300 SDCKFHHPKE RIAQSGANPP GLPLRPGQAV CSYYSMYGLC KYGPTCKFDH PVVAVPHNYS 360 LGLPNLAMLD SPRFGNPRSM STARSSETSP SKSSKFPDWV QKHDAASNKN EKSDTKTSED 420 SPEEAGSSPH SIQSSAAEPL HDQSG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018840775.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform X1 | ||||
TrEMBL | A0A2I4GA72 | 0.0 | A0A2I4GA72_JUGRE; zinc finger CCCH domain-containing protein 3-like isoform X1 | ||||
STRING | EMJ16552 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8030 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-118 | C3H family protein |