PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00009792-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 310aa    MW: 33449.6 Da    PI: 9.0924
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00009792-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.2e-18954147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +g+W++eEde l ++v+ +G+++W++I++ ++ gR++k+c++rw + 
  WALNUT_00009792-RA  9 KGPWSPEEDEALQRLVQSYGPRNWTLISKSIP-GRSGKSCRLRWCNQ 54
                        79******************************.***********985 PP

2Myb_DNA-binding50.74.2e-1663105347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++++eEd  ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
  WALNUT_00009792-RA  63 PFSPEEDGAIISAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 105
                         89******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.082459IPR017930Myb domain
SuperFamilySSF466891.8E-316102IPR009057Homeodomain-like
SMARTSM007177.3E-17857IPR001005SANT/Myb domain
PfamPF002493.6E-18954IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-241062IPR009057Homeodomain-like
CDDcd001673.68E-161153No hitNo description
SMARTSM007177.9E-1360108IPR001005SANT/Myb domain
PROSITE profilePS5129419.70761110IPR017930Myb domain
PfamPF002491.5E-1363105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2263109IPR009057Homeodomain-like
CDDcd001671.30E-1063106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MASSRDRIKG PWSPEEDEAL QRLVQSYGPR NWTLISKSIP GRSGKSCRLR WCNQLSPEVE  60
HRPFSPEEDG AIISAHARFG NKWATIARLL NGRTDNAIKN HWNSTLKRKC SSTTDDLSDD  120
VHAHQPNKRS ASVGAGAAVS GLCLNSSSPS GSDLSDSSVP GMSPSHAYRP LARTVSLAPP  180
TQHLDTLSSN TDPPTLLSLS LPGSDSCEVS NYRVGCNRAG SPTQAINPLV PPPPPPPPPP  240
VASVQQIPVA AQNGYGKNFF SAEFLAVMQD MIRKEVRSYI SGIEQSGPCN LQTDAIRNAV  300
VKRIRVSKIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-4181103105C-Myb DNA-Binding Domain
1msf_C7e-4181103105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018819887.10.0PREDICTED: transcription factor MYB44-like
SwissprotO231601e-87MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A2I4EKF70.0A0A2I4EKF7_JUGRE; transcription factor MYB44-like
STRINGevm.model.supercontig_21.1451e-144(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.18e-67myb domain protein r1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]