PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00009691-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB | ||||||||
Protein Properties | Length: 233aa MW: 25603.3 Da PI: 8.4984 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57 | 4.3e-18 | 39 | 84 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v+++G+++W++I+r++ gR++k+c++rw + WALNUT_00009691-RA 39 KGPWSAEEDRVLTRLVERYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 84 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.2 | 3.4e-17 | 93 | 135 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ WALNUT_00009691-RA 93 PFSAAEDETILAAHARYGNR-WATIARLLP-GRTDNAVKNHWNST 135 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.195 | 34 | 89 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.55E-31 | 36 | 132 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-16 | 38 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-17 | 39 | 84 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-24 | 40 | 92 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.83E-15 | 41 | 83 | No hit | No description |
SMART | SM00717 | 5.3E-15 | 90 | 138 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.507 | 91 | 140 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-23 | 93 | 139 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.7E-14 | 93 | 135 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.01E-11 | 93 | 136 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MERINRCSSN SSTSSDSSSS DSSLSSKTHR DCNKPDRIKG PWSAEEDRVL TRLVERYGPR 60 NWSLISRYIK GRSGKSCRLR WCNQLSPNVE HRPFSAAEDE TILAAHARYG NRWATIARLL 120 PGRTDNAVKN HWNSTLKRRV RGGQHMDGNG GGGGHDGCAS GSVQCMGMEE DDNPLTALTL 180 APPGIGSGRG ECSATEQRTE SMPAGVLDFM RDVIAREVRD YVSSTMSENS GFH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 9e-43 | 35 | 140 | 54 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 9e-43 | 35 | 140 | 54 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018846633.1 | 1e-174 | PREDICTED: myb-related protein Myb4-like | ||||
Swissprot | O23160 | 1e-57 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A2I4GRW1 | 1e-172 | A0A2I4GRW1_JUGRE; myb-related protein Myb4-like | ||||
STRING | EMJ25026 | 2e-98 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5074 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 2e-58 | myb domain protein r1 |
Publications ? help Back to Top | |||
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