PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00009676-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | Dof | ||||||||
Protein Properties | Length: 234aa MW: 24445.9 Da PI: 7.5008 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.3 | 2.9e-37 | 23 | 80 | 3 | 60 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++ l+cprC st tkfCyynny+lsqPr+fCk+CrryWt+GG+lrnvPvGgg+rk+ + WALNUT_00009676-RA 23 TQPLPCPRCGSTSTKFCYYNNYNLSQPRHFCKSCRRYWTQGGTLRNVPVGGGTRKSIT 80 68899**************************************************854 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 3.5E-32 | 24 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.826 | 26 | 80 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 28 | 64 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-19 | 30 | 74 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MPSDEHKPVR VQQSFPHPPP PQTQPLPCPR CGSTSTKFCY YNNYNLSQPR HFCKSCRRYW 60 TQGGTLRNVP VGGGTRKSIT KRSRSTTSTS SSSSSSSSST VTSEAVHANP ISVLPEMVSH 120 DVSLNDNVAV GGGYVNGSFN FLLNSQGPGF MGPGGYGLGS MPGFDEMGFG LAGGGSWAFP 180 EVGDFGVGSG NGASVASAGY NTWQMTGTDE AGLNDGGDSF ASPDLAISTR PGHF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK354149 | 1e-41 | AK354149.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1005F20. | |||
GenBank | AK360934 | 1e-41 | AK360934.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1128K17. | |||
GenBank | AK377058 | 1e-41 | AK377058.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3146P05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018846622.1 | 1e-171 | PREDICTED: dof zinc finger protein DOF1.6-like | ||||
TrEMBL | A0A2I4GRV2 | 1e-170 | A0A2I4GRV2_JUGRE; dof zinc finger protein DOF1.6-like | ||||
STRING | VIT_18s0001g11310.t01 | 6e-62 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2801 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21270.1 | 6e-25 | DOF zinc finger protein 2 |