PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00009674-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | B3 | ||||||||
Protein Properties | Length: 613aa MW: 68930.5 Da PI: 9.4238 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.3 | 1.4e-18 | 19 | 107 | 3 | 99 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 v s++ +s+rl +p +f+++++g + s +tl +sg++W v+l ++ + +l +GW+ Fv+++ ++ gDf+vF++d+ e +++ WALNUT_00009674-RA 19 HVY--SSTRSSDRLKFPVRFIRHMKGRT--SGLVTLVGPSGNTWHVEL--IQQNDDLFLHQGWSAFVRDHFIECGDFLVFRYDS--ELHFT 101 555..889999**********8888774..458***************..7777789************************976..55559 PP EEEE-S CS B3 94 vkvfrk 99 v vf++ WALNUT_00009674-RA 102 VEVFDQ 107 999987 PP | |||||||
2 | B3 | 47.5 | 3.3e-15 | 277 | 369 | 2 | 97 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 + ++++ +v+ s l +p kf +h ++++++++l++++g+ W+v+ ++ +++l +GW Fv+ n++k gD+++F+l+++ e WALNUT_00009674-RA 277 LRIMKSFNVSGSYTLNIPYKFSMAHL--PNSKTKIVLQNLEGECWTVNSVPtTRVNTSHTLCGGWMAFVRGNDIKIGDICIFELVHECEL- 364 55666677888889*******99994..235568**************955555556699************************996655. PP .EEEEE CS B3 92 lvvkvf 97 +v+++ WALNUT_00009674-RA 365 -RVHIL 369 .66654 PP | |||||||
3 | B3 | 56.2 | 6.3e-18 | 489 | 581 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+ ++++ +v+ s l +p +f ++h + ++ +++l++++g+sW+v+ + k+++ +++ +GW Fv+ n++k gD+++F+l+g+ e WALNUT_00009674-RA 489 FVRIMKQFNVSGSYTLKIPYQFSTAHLPD--CKSEIVLRNLRGKSWTVNSVPDSKGRMgHTFCGGWMAFVRGNDVKIGDVCIFELVGKCE- 576 566777778999999********999533..6679***************775555545**************************99433. PP ..EEEE CS B3 91 elvvkv 96 ++v++ WALNUT_00009674-RA 577 -MLVHI 581 .47766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.02E-24 | 11 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.4E-24 | 13 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.98E-20 | 15 | 106 | No hit | No description |
PROSITE profile | PS50863 | 14.311 | 15 | 108 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.9E-11 | 17 | 108 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-16 | 17 | 107 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-22 | 267 | 370 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-23 | 269 | 370 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.34E-19 | 274 | 369 | No hit | No description |
PROSITE profile | PS50863 | 13.38 | 276 | 372 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-13 | 276 | 372 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-12 | 276 | 368 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.8E-23 | 481 | 583 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.46E-24 | 482 | 583 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.35E-21 | 487 | 581 | No hit | No description |
PROSITE profile | PS50863 | 13.719 | 489 | 585 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-15 | 489 | 585 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-15 | 489 | 581 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 613 aa Download sequence Send to blast |
MEEETLEELR NGKRPCFFHV YSSTRSSDRL KFPVRFIRHM KGRTSGLVTL VGPSGNTWHV 60 ELIQQNDDLF LHQGWSAFVR DHFIECGDFL VFRYDSELHF TVEVFDQSAC EKEAAFQSKC 120 SQDSSCLNRG MGQKREREEA TSSSERIFEG VPKKLRGSYS QHYLESEHKP QEGKVDMSNG 180 DGCQRELVVL AKTCQETISS NKTKQGGSPM KNSDMPFQSK AVKEKRVSDI IQFNTKASIQ 240 SRTSEEDDLY LHGRVGLSML SAHEVAQSFT SSFPYFLRIM KSFNVSGSYT LNIPYKFSMA 300 HLPNSKTKIV LQNLEGECWT VNSVPTTRVN TSHTLCGGWM AFVRGNDIKI GDICIFELVH 360 ECELRVHILG VGREVLDCQN GKVVCSRPSA GHKNLKSLPK KTRGKSPKAS KRHHEQTFSV 420 DVRKQCSTKN YTKVPVSSQS KSANKKLVVQ RKKVKEDEIS SQNKGSMRMM LALDEERVAR 480 SFSSCFPIFV RIMKQFNVSG SYTLKIPYQF STAHLPDCKS EIVLRNLRGK SWTVNSVPDS 540 KGRMGHTFCG GWMAFVRGND VKIGDVCIFE LVGKCEMLVH ISGSGKKGLD HQSGSATSNE 600 LAVVSYTSSK PSQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018846617.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1 | ||||
TrEMBL | A0A2I4GRU7 | 0.0 | A0A2I4GRU7_JUGRE; B3 domain-containing protein Os01g0723500-like isoform X1 | ||||
STRING | XP_010089923.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11470 | 32 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-17 | B3 family protein |