PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00009674-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family B3
Protein Properties Length: 613aa    MW: 68930.5 Da    PI: 9.4238
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00009674-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-1819107399
                         EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          v   s++ +s+rl +p +f+++++g +  s  +tl  +sg++W v+l   ++ +  +l +GW+ Fv+++ ++ gDf+vF++d+  e +++
  WALNUT_00009674-RA  19 HVY--SSTRSSDRLKFPVRFIRHMKGRT--SGLVTLVGPSGNTWHVEL--IQQNDDLFLHQGWSAFVRDHFIECGDFLVFRYDS--ELHFT 101
                         555..889999**********8888774..458***************..7777789************************976..55559 PP

                         EEEE-S CS
                  B3  94 vkvfrk 99 
                         v vf++
  WALNUT_00009674-RA 102 VEVFDQ 107
                         999987 PP

2B347.53.3e-15277369297
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         + ++++ +v+ s  l +p kf  +h   ++++++++l++++g+ W+v+    ++   +++l +GW  Fv+ n++k gD+++F+l+++ e  
  WALNUT_00009674-RA 277 LRIMKSFNVSGSYTLNIPYKFSMAHL--PNSKTKIVLQNLEGECWTVNSVPtTRVNTSHTLCGGWMAFVRGNDIKIGDICIFELVHECEL- 364
                         55666677888889*******99994..235568**************955555556699************************996655. PP

                         .EEEEE CS
                  B3  92 lvvkvf 97 
                          +v+++
  WALNUT_00009674-RA 365 -RVHIL 369
                         .66654 PP

3B356.26.3e-18489581196
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                         f+ ++++ +v+ s  l +p +f ++h  +  ++ +++l++++g+sW+v+   + k+++ +++ +GW  Fv+ n++k gD+++F+l+g+ e 
  WALNUT_00009674-RA 489 FVRIMKQFNVSGSYTLKIPYQFSTAHLPD--CKSEIVLRNLRGKSWTVNSVPDSKGRMgHTFCGGWMAFVRGNDVKIGDVCIFELVGKCE- 576
                         566777778999999********999533..6679***************775555545**************************99433. PP

                         ..EEEE CS
                  B3  91 elvvkv 96 
                          ++v++
  WALNUT_00009674-RA 577 -MLVHI 581
                         .47766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.02E-2411110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.4E-2413110IPR015300DNA-binding pseudobarrel domain
CDDcd100172.98E-2015106No hitNo description
PROSITE profilePS5086314.31115108IPR003340B3 DNA binding domain
SMARTSM010192.9E-1117108IPR003340B3 DNA binding domain
PfamPF023621.5E-1617107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-22267370IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-23269370IPR015300DNA-binding pseudobarrel domain
CDDcd100179.34E-19274369No hitNo description
PROSITE profilePS5086313.38276372IPR003340B3 DNA binding domain
SMARTSM010192.2E-13276372IPR003340B3 DNA binding domain
PfamPF023623.8E-12276368IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-23481583IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-24482583IPR015300DNA-binding pseudobarrel domain
CDDcd100173.35E-21487581No hitNo description
PROSITE profilePS5086313.719489585IPR003340B3 DNA binding domain
SMARTSM010191.1E-15489585IPR003340B3 DNA binding domain
PfamPF023622.5E-15489581IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MEEETLEELR NGKRPCFFHV YSSTRSSDRL KFPVRFIRHM KGRTSGLVTL VGPSGNTWHV  60
ELIQQNDDLF LHQGWSAFVR DHFIECGDFL VFRYDSELHF TVEVFDQSAC EKEAAFQSKC  120
SQDSSCLNRG MGQKREREEA TSSSERIFEG VPKKLRGSYS QHYLESEHKP QEGKVDMSNG  180
DGCQRELVVL AKTCQETISS NKTKQGGSPM KNSDMPFQSK AVKEKRVSDI IQFNTKASIQ  240
SRTSEEDDLY LHGRVGLSML SAHEVAQSFT SSFPYFLRIM KSFNVSGSYT LNIPYKFSMA  300
HLPNSKTKIV LQNLEGECWT VNSVPTTRVN TSHTLCGGWM AFVRGNDIKI GDICIFELVH  360
ECELRVHILG VGREVLDCQN GKVVCSRPSA GHKNLKSLPK KTRGKSPKAS KRHHEQTFSV  420
DVRKQCSTKN YTKVPVSSQS KSANKKLVVQ RKKVKEDEIS SQNKGSMRMM LALDEERVAR  480
SFSSCFPIFV RIMKQFNVSG SYTLKIPYQF STAHLPDCKS EIVLRNLRGK SWTVNSVPDS  540
KGRMGHTFCG GWMAFVRGND VKIGDVCIFE LVGKCEMLVH ISGSGKKGLD HQSGSATSNE  600
LAVVSYTSSK PSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018846617.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
TrEMBLA0A2I4GRU70.0A0A2I4GRU7_JUGRE; B3 domain-containing protein Os01g0723500-like isoform X1
STRINGXP_010089923.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-17B3 family protein