PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00009671-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family G2-like
Protein Properties Length: 338aa    MW: 37546.5 Da    PI: 8.278
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00009671-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1017.5e-32141194255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         pr+rWt++LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  WALNUT_00009671-RA 141 PRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 194
                         9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.56E-15138195IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-28139195IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-23141194IPR006447Myb domain, plants
PfamPF002492.2E-7142193IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MLFGSNPIMI PPSPLPDLSL QISPPSASDF EAKKVISCDG STRKAVLYSD RSSTTDSGSS  60
GSDLSHENGF FHPERNYDHL GPFEPMLSLG LEMADSSPPP VKLIPRNHHH LQHNHQPQIC  120
GREFKRNARL ISGMKRSVRA PRMRWTTTLH AHFVHAVELL GGHERATPKS VLELMNVKDL  180
TLAHVKSHLQ MYRTVKSTDK GSGQVQADIA LNPRPGLVDV DQGVLACEKP NPVQTTLQIF  240
QRMETSSWST NRSSRHENAL THSHFKANDT KADGHMNAVV VSADSVKEEE RRLLDSSSNI  300
KSASNTLLNL EFTLGRPNWL QMDCVESSND QLKTLLKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-17142196458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-17142196458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-17142196357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-17142196357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-17142196357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-17142196357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-17142196458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-17142196458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-17142196458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-17142196458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-17142196458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-17142196458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018846614.10.0PREDICTED: probable transcription factor KAN4
TrEMBLA0A2I4GRT70.0A0A2I4GRT7_JUGRE; probable transcription factor KAN4
STRINGXP_006473404.11e-124(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44633358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.11e-60G2-like family protein