PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00009593-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | NAC | ||||||||
Protein Properties | Length: 289aa MW: 32749.9 Da PI: 9.2868 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.8 | 2.6e-33 | 52 | 192 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 lp G++F+Ptd+e++ e+L+ kv+++ + + +i+ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ WALNUT_00009593-RA 52 LPSGVKFDPTDQEIL-EHLESKVQSDArkvhplI---DefipTIEGEnGICYTHPEKLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKVQt 137 699***********9.99******9995665443...133333665557**********.555666688******************7444 PP NAM 80 .....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk++++l+ + +++g kk+Lv+y g+++k+ekt+Wvmh+y+l WALNUT_00009593-RA 138 dieggETRWHKTGKTRPILD-SCKVKGYKKILVLYtnYGKKRKPEKTSWVMHQYHL 192 56655778************.8889**********6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-37 | 40 | 211 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.488 | 52 | 211 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-15 | 53 | 192 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MTQCNEHADN QALIITKADK DDHYPIRTCR MCGYQFKCRD HMQAGLQDLP GLPSGVKFDP 60 TDQEILEHLE SKVQSDARKV HPLIDEFIPT IEGENGICYT HPEKLPGVSK DGLVRHFFHR 120 PSKAYTTGTR KRRKVQTDIE GGETRWHKTG KTRPILDSCK VKGYKKILVL YTNYGKKRKP 180 EKTSWVMHQY HLGNNEEEKD GELVVSKVFY QTQPRQCGSL ISKDDSSVSS KSKGQNNAHQ 240 GGTAGFRKNA LFEFYNSSLI SFDQGSKTRA STPQLLSHFP VNDVSSFIS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00459 | DAP | Transfer from AT4G28500 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018828262.1 | 0.0 | PREDICTED: NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 1e-114 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A2I4F9D8 | 0.0 | A0A2I4F9D8_JUGRE; NAC domain-containing protein 73-like | ||||
STRING | cassava4.1_032739m | 1e-143 | (Manihot esculenta) | ||||
STRING | XP_002517849.1 | 1e-143 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1228 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-115 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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