PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00009590-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | NAC | ||||||||
Protein Properties | Length: 143aa MW: 16178.3 Da PI: 10.3234 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 47.6 | 5.3e-15 | 6 | 54 | 81 | 128 |
NAM 81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk++++l+ + +l+g kk+Lv+y g+++k+ekt+Wvmh+y+l WALNUT_00009590-RA 6 TRWHKTGKTRPILD-SCKLKGYKKILVLYtnYGKKRKPEKTNWVMHQYHL 54 68************.8889**********6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 19.957 | 1 | 73 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.27E-18 | 5 | 73 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-6 | 7 | 54 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MEGGETRWHK TGKTRPILDS CKLKGYKKIL VLYTNYGKKR KPEKTNWVMH QYHLGNNEEE 60 KDGELVVSKV FYQTQPRQCG SLISKDSSVS SKSKGQNHAH QGGTAGLRKN ALFEFYNSSL 120 ISFDQGSKTR ASTPQLLSHF PSQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018828262.1 | 6e-87 | PREDICTED: NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 2e-44 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A2I4F9D8 | 1e-85 | A0A2I4F9D8_JUGRE; NAC domain-containing protein 73-like | ||||
STRING | XP_002517849.1 | 3e-64 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-45 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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