PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00009543-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NF-YC

Protein Properties

Length: 282aa MW: 31375.8 Da PI: 4.6325

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00009543-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	52.4	1.2e-16	17	91	24	98
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 arikki++adedv +i+ +P l+ska elf+ +l ++ + + +t++ ++++v+ ++fdfl div + WALNUT_00009543-RA 17 ARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDHTYEITLKRGAKTMNSLHLKQCVQTFNVFDFLRDIVNK 91 8***********************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	1.9E-16	16	76	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.2E-22	17	90	IPR009072	Histone-fold
SuperFamily	SSF47113	2.67E-19	23	93	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MAPKHSFSLA LLLVGQARIK KIMQADEDVG KIAMAVPLLV SKALELFLQD LCDHTYEITL 60 KRGAKTMNSL HLKQCVQTFN VFDFLRDIVN KVPDLGGFDA ADEDRSAAKR RKVTDDDEND 120 SDDESKRSGM LEAGHSTSSG RGRGRGRGRG RGRGSRTVER EVTAHSEKFE DDSEISKHNQ 180 GLERLNNWAE TEDSKEQILA GKGEEAPIRN FDLNVVLDEN GDLETVAAGS GSSCAELVPE 240 TKHHEYPGWS LPDMEKMAID PIQLANFSRR IEEDEEDYDE EG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-18	17	77	15	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	152	RGRGRGRGRGR
2	144	153	RGRGRGRGRG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018833729.1	0.0	PREDICTED: dr1-associated corepressor-like isoform X3
TrEMBL	A0A2I4FPZ5	0.0	A0A2I4FPZ5_JUGRE; dr1-associated corepressor-like isoform X3
STRING	XP_010106320.1	1e-100	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	1e-54	NF-YC family protein