PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00009483-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | GATA | ||||||||
Protein Properties | Length: 382aa MW: 41890.9 Da PI: 6.068 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.7 | 1.6e-18 | 295 | 329 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l WALNUT_00009483-RA 295 CSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRL 329 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 4.7E-16 | 289 | 343 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.517 | 289 | 325 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.8E-14 | 289 | 351 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.8E-14 | 293 | 327 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 9.23E-14 | 294 | 342 | No hit | No description |
Pfam | PF00320 | 2.3E-16 | 295 | 329 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 295 | 320 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MLSRTPHPLF SQFHHTFSCS IPPTSATSTI TSVPFLKYPC IQAETEMECV EAALKTSSRK 60 EMTVKSTPQL VFQDLSPGNG QNGVGCDDFF VDELLDLSNE DGFVKEEPAE EEEEQEEEDK 120 GFVSVSHQQD HQNSNTKITL SAKDEFGSEL SVPTDDLANL EWLFVEDSFP EFCTPYPAGS 180 LTEKPKNEGP EPELVKPCFK TPVPAKARSK RTRTGGRVWS LSSPSLTESS SSSTSSTSSS 240 SPSSTWLIYP TAAQKAGLVE TVYSVEKPPA KRQKKKPTPG EPALVSFGAQ LPRRCSHCGV 300 QKTPQWRTGP LGAKTLCNAC GVRFKSGRLL PEYRPACSPT FSSELHSNHH RKVLEMRRKK 360 ESPGVTQSDL AAPAVSSFLE EL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018822057.1 | 0.0 | PREDICTED: GATA transcription factor 5-like | ||||
Swissprot | Q9FH57 | 2e-78 | GATA5_ARATH; GATA transcription factor 5 | ||||
TrEMBL | A0A2I4ERN3 | 0.0 | A0A2I4ERN3_JUGRE; GATA transcription factor | ||||
STRING | XP_008241780.1 | 1e-131 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1108 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 5e-77 | GATA transcription factor 5 |