PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00009473-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family DBB
Protein Properties Length: 221aa    MW: 24416.7 Da    PI: 7.4144
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00009473-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.52.4e-07433534
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                         C+ +e+  ++ fC  ++  lC++C ++ H
  WALNUT_00009473-RA  4 LCDACESAAAIVFCAADEAALCRSCDEKVH 33
                        7**************************998 PP
2zf-B_box28.43.4e-095291237
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                        + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  WALNUT_00009473-RA 52 DVPRCDICENAPAFFYCEVDGSSLCLQCDMIVHVGgkrtH 91
                        5799**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.5E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.296147IPR000315B-box-type zinc finger
CDDcd000211.84E-6345No hitNo description
PfamPF006439.2E-6341IPR000315B-box-type zinc finger
SuperFamilySSF578458.01E-54886No hitNo description
SMARTSM003368.4E-105196IPR000315B-box-type zinc finger
PROSITE profilePS501198.9735196IPR000315B-box-type zinc finger
PfamPF006432.8E-75285IPR000315B-box-type zinc finger
CDDcd000213.34E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MRTLCDACES AAAIVFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLANP SDVPRCDICE  60
NAPAFFYCEV DGSSLCLQCD MIVHVGGKRT HGRYLLFRQR VEFPGDKAGL LEEPAMHPVG  120
AGENRRGQNQ PPKLTMGENQ QNQRASSVPN SAANADGHSK MDKMIDLNIQ PHRMHEQASN  180
NQVRVSTSSA TSIYIYIYLN LLKAPFHLPN KWNGCNLNDQ T
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018822005.11e-136PREDICTED: B-box zinc finger protein 19-like isoform X1
SwissprotC0SVM53e-76BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A2I4ERH31e-135A0A2I4ERH3_JUGRE; B-box zinc finger protein 19-like isoform X1
STRINGEOX909021e-108(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.15e-78DBB family protein