PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00009341-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 505aa    MW: 56343.2 Da    PI: 5.6019
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00009341-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.8e-14297343354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h + Er RR+++N+++  Lr+l+P++     +K + a+++  A++YIk+L
  WALNUT_00009341-RA 297 TKHFATERERRQNLNDKYKALRSLVPNP-----TKTDRASVVLDAIDYIKEL 343
                         68**************************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-16292363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.955294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-12297343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-13297352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.96E-13297347No hitNo description
SMARTSM003532.5E-12300349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MYEETGCFDP NPMSEDAVSV AVAEDGFSQT VPNCTHNNFE DNLRLSMEEL SYQHQHHNQT  60
SIHDQAAAAA AAAMEIELQQ HLGFNMDSSY NGHNHSNTHL VDSSYGVHEM QEMDPFNHHH  120
HHQDQQQQLQ QIDIQNGHQS YDYSSLPNSP YPPTPDLLNL FHLPRCSASS LLPNSSISFS  180
NPAQKTTASY QSSQLGFLGD IPTGADSASG ASVLYDPLFH LNLPPQPPLF RQLFGQSLPN  240
GYSLPCSRNG SLFGTGGDER EGNGGVYQDG DVRQFENGVL EFSRDMGCIG KGRDGETKHF  300
ATERERRQNL NDKYKALRSL VPNPTKTDRA SVVLDAIDYI KELLRTVNEL KLLVEKKRCG  360
REMRKRQKTE TGDTSGDVEN CNTKPVGDPH DGQSYNGSLR SSWLQRKSKD TEVDVRIIDD  420
EVTIKLVQRK NNFLLFVSKA LDELQLDLHH IAGGQCGDFY SFLFNTKIYE GSSVHASSIA  480
NKLIEVVDRQ CCTAAMNINQ PTSSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018825412.10.0PREDICTED: transcription factor bHLH91-like isoform X1
TrEMBLA0A2I4F1890.0A0A2I4F189_JUGRE; transcription factor bHLH91-like isoform X1
STRINGVIT_15s0107g00380.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.16e-85bHLH family protein