PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00009338-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

bHLH

Protein Properties

Length: 504aa MW: 56125.7 Da PI: 5.4864

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00009338-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.6	8.2e-12	297	343	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h Er RR+ N++++ Lr+l+P++ +K + a+++ A++YIk+L WALNUT_00009338-RA 297 TKHLTTERERRQSWNDKYNALRSLVPNP-----TKADRASVVGDAIDYIKEL 343 678899********************.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.557	294	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.71E-14	297	361	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-12	297	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-9	297	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.66E-10	297	347	No hit	No description
SMART	SM00353	1.8E-9	300	349	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MYEETGCFDT NPMSEDAVAV AVAVAEDGFS QTVPNCTHNS FEDNLRLSME ELSYQHHNHN 60 QTSIHDQDAA AAAAATAMEI ELQQHLAFNM DSSYNGHNHS NTHLVDSSYG VHEMQEMDPF 120 NHHHHHQDQQ QLQQIDIQNG LQSYDYSSLP NSPYPPTPDL LNLFHLPRCS ASSLPHNSSI 180 SFSNPGQKTS ASYQSSHLGD IPTGADSASG ASVLYDPLFH LNLPPQPPLF RQLFGQSLPN 240 GYSLPGSRNG SLFGTGGDER EGNGGVYQDG DVRQFENGVL EFSRDMGCIR KGRDGETKHL 300 TTERERRQSW NDKYNALRSL VPNPTKADRA SVVGDAIDYI KELLRTVNEL KLLVEKKRCG 360 RERGKRQKTE GEDTAGDVEN YNTKHVGDPH DGQSYNGSLR SSWLQRKSKD TEVDVRIIDD 420 EVTIKLVQRK NNCLLFVSKA LDELQLDLHH VAGGQCGDFY SFLFNTKIYE GSSVYASSIA 480 NKLIEVVDRQ CCAAMNINQP TSSY

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MYEETGCFDT NPMSEDAVAV AVAVAEDGFS QTVPNCTHNS FEDNLRLSME ELSYQHHNHN  60
QTSIHDQDAA AAAAATAMEI ELQQHLAFNM DSSYNGHNHS NTHLVDSSYG VHEMQEMDPF  120
NHHHHHQDQQ QLQQIDIQNG LQSYDYSSLP NSPYPPTPDL LNLFHLPRCS ASSLPHNSSI  180
SFSNPGQKTS ASYQSSHLGD IPTGADSASG ASVLYDPLFH LNLPPQPPLF RQLFGQSLPN  240
GYSLPGSRNG SLFGTGGDER EGNGGVYQDG DVRQFENGVL EFSRDMGCIR KGRDGETKHL  300
TTERERRQSW NDKYNALRSL VPNPTKADRA SVVGDAIDYI KELLRTVNEL KLLVEKKRCG  360
RERGKRQKTE GEDTAGDVEN YNTKHVGDPH DGQSYNGSLR SSWLQRKSKD TEVDVRIIDD  420
EVTIKLVQRK NNCLLFVSKA LDELQLDLHH VAGGQCGDFY SFLFNTKIYE GSSVYASSIA  480
NKLIEVVDRQ CCAAMNINQP TSSY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018825414.1	0.0	PREDICTED: transcription factor bHLH91-like isoform X3
Refseq	XP_018825415.1	0.0	PREDICTED: transcription factor bHLH91-like isoform X3
TrEMBL	A0A2I4F196	0.0	A0A2I4F196_JUGRE; transcription factor bHLH91-like isoform X3
STRING	VIT_15s0107g00380.t01	1e-180	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3743	32	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	5e-78	bHLH family protein