PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00009220-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 335aa    MW: 37421.6 Da    PI: 7.4671
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00009220-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-161462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W++eEd  l++ ++++G+g +W + +++ g++R++k+c++rw++yl
  WALNUT_00009220-RA 14 RGPWSPEEDATLKEFIEKHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                        89*********************************************97 PP
2Myb_DNA-binding37.36.5e-1269111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g ++ +Ed ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
  WALNUT_00009220-RA  69 GEFSDDEDRIICTLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                         789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.639966IPR017930Myb domain
SuperFamilySSF466898.03E-2711109IPR009057Homeodomain-like
SMARTSM007172.2E-121364IPR001005SANT/Myb domain
PfamPF002491.7E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-241569IPR009057Homeodomain-like
CDDcd001677.68E-91662No hitNo description
SMARTSM007176.9E-1267115IPR001005SANT/Myb domain
PROSITE profilePS5129415.40267117IPR017930Myb domain
PfamPF002491.0E-1069111IPR001005SANT/Myb domain
CDDcd001676.96E-870113No hitNo description
Gene3DG3DSA:1.10.10.602.4E-2270116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDATLKEFIE KHGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDDEDRIIC TLFATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKFIGI  120
FPPSQRKTHP VFTLSNALQT SSSSSSTTTS TSSYQGSNIS YYNPTTSFTG LEPIPSLFSS  180
NYSAANAATI LQARENLVGQ LQNCYVKDNL LMFGGEASCS SSDGSSNNLI SHSKERREYE  240
YGAGTGGGGV VETYEVQMAP QNCFYNGVEG NQRFTVSNGG DHHDLNGWIE KQNHKKFYEQ  300
QLDYGFDEIK QLISTDGGSN FLFDEHKTEE RLLYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-25141167107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2985081e-100AB298508.1 Daucus carota DcMYB4 mRNA for transcription factor DcMYB4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018856949.10.0PREDICTED: transcription factor RAX2-like
RefseqXP_018856954.10.0PREDICTED: transcription factor RAX2-like
TrEMBLA0A2I4HLB00.0A0A2I4HLB0_JUGRE; transcription factor RAX2-like
STRINGPOPTR_0006s12530.11e-134(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.17e-75myb domain protein 36