PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00009164-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 257aa    MW: 29687.4 Da    PI: 6.0556
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00009164-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.5e-141764148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd++l+ +++++G  +W++ ++  g+ R++k+c++rw +yl
  WALNUT_00009164-RA 17 KGAWSPEEDQKLKTYIERYGIWNWSRMPKPAGLARSGKSCRLRWVNYL 64
                        79******************99************************97 PP
2Myb_DNA-binding51.32.6e-1670115148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++++e++e +++ ++ lG++ W+ Ia++++ gRt++++k++w+++l
  WALNUT_00009164-RA  70 RGNFSEEDEETILKWHEVLGNR-WSVIAAKLP-GRTDNEIKNYWHTHL 115
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.4731264IPR017930Myb domain
SuperFamilySSF466891.39E-2716111IPR009057Homeodomain-like
SMARTSM007172.5E-91666IPR001005SANT/Myb domain
PfamPF002491.4E-121764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-221871IPR009057Homeodomain-like
CDDcd001672.27E-81964No hitNo description
PROSITE profilePS5129424.68765119IPR017930Myb domain
SMARTSM007171.2E-1569117IPR001005SANT/Myb domain
PfamPF002491.3E-1470115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-2572120IPR009057Homeodomain-like
CDDcd001671.31E-1072115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MTEMVKSPDR KKILFRKGAW SPEEDQKLKT YIERYGIWNW SRMPKPAGLA RSGKSCRLRW  60
VNYLRPDIKR GNFSEEDEET ILKWHEVLGN RWSVIAAKLP GRTDNEIKNY WHTHLKKRLK  120
NNSLSTTVPQ TVVDVNKNNS SGIQDLLLCD APKISNLDGT RDIIPMSPQL STDHDLSSSS  180
TDPAVEIDRK QPIEENFGSS KTSEELQTSW EQTLSVQEQD IFMPETDPGF VCPTTAVWLQ  240
DPIYHPYSSY NEFWVDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26171197108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018831400.10.0PREDICTED: transcription factor WER-like
TrEMBLA0A2I4FIC10.0A0A2I4FIC1_JUGRE; transcription factor WER-like
STRINGXP_008224916.12e-77(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15840411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.18e-54myb domain protein 14