PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00009123-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | G2-like | ||||||||
Protein Properties | Length: 388aa MW: 44173.8 Da PI: 7.1606 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.3 | 1.1e-30 | 63 | 116 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rF++ave +GG+e+AtPk +l++m++kgL+++hvkSHLQ+YR+ WALNUT_00009123-RA 63 PRLRWTPDLHLRFIHAVEIMGGQERATPKMVLQMMNIKGLSIAHVKSHLQMYRS 116 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-27 | 59 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.801 | 59 | 119 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.06E-14 | 62 | 117 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-21 | 63 | 118 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.2E-8 | 64 | 115 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MGESDVSECS KRSPSDQIED GSCESGENDD ECEPINGGSS SNSTVEESEK KTSVRPYARS 60 KLPRLRWTPD LHLRFIHAVE IMGGQERATP KMVLQMMNIK GLSIAHVKSH LQMYRSKKVH 120 DPDQVLAEPR HHHVESGDRN IFKLSQLPMF QGYNPGHISN YRFGDASSWS TAYENLLGFT 180 AGRRSMNNIS STTRFYEKVG ERILGSSYSN YWTDCMMNFR PGNSTFCKQP TAWRTQELRD 240 GVHKHDSSLQ TRARISSTRS DLKPVTHLQA EIQQEHTSSC NDNAISDFSK TTNVKEWNST 300 LKRKASECEQ LDLDLSLRLT SSGNDDYHHE NQRSSRDSKV EISDLSLCLY SSQSSSSHQI 360 LKERRDHAGK EQERRRACTH DHDLDLTI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 9e-17 | 64 | 118 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-17 | 64 | 118 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-17 | 64 | 118 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-17 | 64 | 118 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00297 | DAP | Transfer from AT2G38300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018826195.1 | 0.0 | PREDICTED: uncharacterized protein LOC108995151 | ||||
TrEMBL | A0A2I4F3G7 | 0.0 | A0A2I4F3G7_JUGRE; uncharacterized protein LOC108995151 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2378 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 1e-61 | G2-like family protein |