PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00009034-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | Dof | ||||||||
Protein Properties | Length: 252aa MW: 27611.1 Da PI: 10.011 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 112.8 | 1.6e-35 | 23 | 82 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+c rC+stntkfCyynnysl+qPry+Ck+C+ryWt+GG++rnvPvGg +rknkks WALNUT_00009034-RA 23 PQAHLNCRRCNSTNTKFCYYNNYSLTQPRYLCKTCKRYWTEGGSIRNVPVGGCSRKNKKS 82 57789*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-21 | 23 | 74 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.6E-30 | 25 | 81 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 26.785 | 27 | 81 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 29 | 65 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MEGIMINTRT SLLSAEKRAI RSPQAHLNCR RCNSTNTKFC YYNNYSLTQP RYLCKTCKRY 60 WTEGGSIRNV PVGGCSRKNK KSAAASRSTS SKTPDFNPVL SLPQFSSQNL KAKEAQVLNL 120 AFPTIDKKYH GWSQGNSSSS ASSAPLSAFE LLRTGIASRG LNTYIPSPML DTSALYYSSA 180 GFHLQELKTT PGFSVDGLGS TGYEIQENSA KLLFPFGESK QISSTNEVEP RKGQAGISTG 240 NWSHAMLNGG YW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018846786.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.5-like | ||||
TrEMBL | A0A2I4GSB2 | 0.0 | A0A2I4GSB2_JUGRE; dof zinc finger protein DOF2.5-like | ||||
STRING | EOX95655 | 3e-82 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF674 | 34 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.3 | 3e-47 | Dof family protein |