PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008999-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 207aa    MW: 23730.8 Da    PI: 7.062
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008999-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.5e-191562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++l ++++ +G ++W+t+a + g++R++k+c++rw++yl
  WALNUT_00008999-RA 15 KGAWTEEEDKKLSQYIEIHGAKRWTTVAIKAGLNRCGKSCRLRWLNYL 62
                        79********************************************97 PP
2Myb_DNA-binding48.91.5e-1568113148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+ +  E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  WALNUT_00008999-RA  68 RGNISDAEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 113
                         788999****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.7351062IPR017930Myb domain
SuperFamilySSF466896.64E-2914109IPR009057Homeodomain-like
SMARTSM007179.5E-161464IPR001005SANT/Myb domain
PfamPF002491.2E-171562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-241669IPR009057Homeodomain-like
CDDcd001672.63E-111762No hitNo description
PROSITE profilePS5129425.50663117IPR017930Myb domain
SMARTSM007175.4E-1567115IPR001005SANT/Myb domain
PfamPF002496.5E-1468113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2470118IPR009057Homeodomain-like
CDDcd001677.06E-1072113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010090Biological Processtrichome morphogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0048629Biological Processtrichome patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MAPNNDGSAK KVMNKGAWTE EEDKKLSQYI EIHGAKRWTT VAIKAGLNRC GKSCRLRWLN  60
YLRPNIKRGN ISDAEEDLIL RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN SHLSKKINHK  120
EKAVEVTTTK ETMPQKLRDI VQGDIEDVKL EIGNSVGNFD ANEFFDFTAA DASHGLEWVN  180
KFLGSYSLES VDNFLELEED PWITENR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-291311725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018819231.11e-152PREDICTED: transcription factor MYB114-like
SwissprotP102902e-50MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLA0A2I4EIK41e-151A0A2I4EIK4_JUGRE; transcription factor MYB114-like
STRINGXP_010053502.18e-92(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21483288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.13e-52myb domain protein 66
Publications ? help Back to Top
  1. Chen B,Wang X,Hu Y,Wang Y,Lin Z
    Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
    Mol. Biotechnol., 2004. 26(3): p. 187-92
    [PMID:15004287]
  2. Paz-Ares J,Ghosal D,Saedler H
    Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
    EMBO J., 1990. 9(2): p. 315-21
    [PMID:2303027]
  3. Cone KC,Burr FA,Burr B
    Molecular analysis of the maize anthocyanin regulatory locus C1.
    Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
    [PMID:3025847]
  4. Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
    The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
    EMBO J., 1987. 6(12): p. 3553-8
    [PMID:3428265]
  5. Scheffler B, et al.
    Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
    Mol. Gen. Genet., 1994. 242(1): p. 40-8
    [PMID:7904044]
  6. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]
  7. Singer T,Gierl A,Peterson PA
    Three new dominant C1 suppressor alleles in Zea mays.
    Genet. Res., 1998. 71(2): p. 127-32
    [PMID:9717435]