PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00008981-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB_related | ||||||||
Protein Properties | Length: 608aa MW: 68080.8 Da PI: 7.0066 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.4 | 3.8e-09 | 486 | 534 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT+ E +l+++v q G g+W+ I r +Rt ++k++w+++l WALNUT_00008981-RA 486 SWTPSEVMRLIEGVSQCGVGRWAEIKRLSFpssSRRTSVDLKDKWRNLL 534 5**************************9878**9*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.81 | 479 | 538 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-11 | 480 | 535 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.29E-14 | 481 | 540 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.7E-9 | 483 | 536 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-7 | 486 | 534 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 8.95E-19 | 487 | 535 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 608 aa Download sequence Send to blast |
MNTTSKDCSI TFDEIANMFT PKFSEVDLSL FAASEHEAIG LEHFLMEPKC NRNLIGVVDF 60 ETFHSQKFFD VEDFSGAIEH SCSCNFTTEG IHMWKISTKD AVCSNSAKEV REEKRESIED 120 MLNDNVFDGK TRLPTTGKEF GLDAKSADKL VILDNGPCKE SYLGNADLES LSPGFDERDY 180 VAEISYMSSA SVPALQFTHN HNSPMLNQMT VHELHEAFKS VFGRETLVTD KQWLKHRVLF 240 GLRNQVESDS DLNHIKCGTT SYKTEDKTLC LSSSDSSRSA ASSIKCVLGD ETMSLDWHVG 300 RKGLAGLDLQ TTSMELSEIE LCSHDGGDKA LVTRKRLRKP PKRYIEESLE ANSKYCKGKS 360 GAVRPRKCLK EFGTSQLACE DKPFKGSCIQ VPFGLPIEEG HVKINASYWG ATSKAALLLE 420 LPWHLVDPFS TEFQDSENCR DDRISSPKQL VTEPSAAASQ DEISEDEHVT RSIVRKGSSR 480 RKHHISWTPS EVMRLIEGVS QCGVGRWAEI KRLSFPSSSR RTSVDLKDKW RNLLRACCVQ 540 LQSKRKVKQG QKQASHRVPE SVLWRVRELA TTYPYPRESN SKVAYTAPIS SSFPAAIQNR 600 SVALSTSV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018819810.1 | 0.0 | PREDICTED: uncharacterized protein LOC108990329 isoform X2 | ||||
TrEMBL | A0A2I4EK86 | 0.0 | A0A2I4EK86_JUGRE; uncharacterized protein LOC108990329 isoform X2 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15018 | 13 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 2e-38 | TRF-like 6 |