PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008915-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family SBP
Protein Properties Length: 391aa    MW: 43019.8 Da    PI: 7.554
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008915-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.31.5e-4094170278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         C v+gC++dls++++y+rrhkvCe hsk+p+v++ g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  WALNUT_00008915-RA  94 CLVDGCTSDLSNCRDYNRRHKVCELHSKTPQVIICGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 170
                         **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.5E-3286155IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.24891168IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-3792173IPR004333Transcription factor, SBP-box
PfamPF031101.0E-2994167IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MDWHLKAPSW DFTELEQEAF PNTETVGGSS SFGYQRTNEG DFSVDLKLGQ LGNSAHDPVN  60
KWKEPGVSKM SSSPSGSSKR ARATNNGSNH PVSCLVDGCT SDLSNCRDYN RRHKVCELHS  120
KTPQVIICGQ KQRFCQQCSR FHSLEEFDEG KRSCRKRLDG HNRRRRKPQP EPLSRSGNFL  180
SNYQGTQLMP FSSSHVYPAT TMVSPAWAGV LNTAADARLH NQQQQLQLLD KEKLFLGSSP  240
STSSTNYMGG KQLSFLQGGS TILNNQSSLE APVCQPLLRN IALSENGGTR SKMYGDRLTT  300
GVHDSDCALS LLSSPQSQSS GLALSHMVHP NSVSLVQPLD SSLHGNNLEP MEAVLISSGS  360
DSNIHCQGMF HMASEESPAN ETPQTFPFRW E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-2885167284squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150167KRSCRKRLDGHNRRRRKP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018829038.10.0PREDICTED: squamosa promoter-binding-like protein 13A isoform X3
RefseqXP_018829105.10.0PREDICTED: squamosa promoter-binding-like protein 13A isoform X3
TrEMBLA0A2I4FBN20.0A0A2I4FBN2_JUGRE; squamosa promoter-binding-like protein 13A isoform X3
STRINGEOY225190.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.17e-76SBP family protein