PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008866-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 546aa    MW: 61737.7 Da    PI: 6.2612
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008866-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS406.23.2e-1241765461374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l+e+L  cAeavs++d +la+al++ l++++s +gdp+qRl ay++e+L+arl rs++ +yk+l++++ts    se +++++++++++P+ 
  WALNUT_00008866-RA 176 LREVLEYCAEAVSDNDVSLADALMEVLEKRVSISGDPVQRLSAYMLEGLRARLKRSGTVIYKSLRCEPTS----SELMSYMSILYDICPYW 262
                         5788999*************************************************************96....899999*********** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf+++ aN  I e +e+e r+HiiDf+i qG+QW++L+++La Rp+gpp +RiTgv++++s   +   l+ +g++L +fA++ +vpfef++
  WALNUT_00008866-RA 263 KFAYISANVVIEEVMENEPRIHIIDFQIAQGTQWMSLIHSLARRPGGPPPVRITGVDDSQSAhaRGGGLHIVGQKLLEFAKSRHVPFEFHA 353
                         **********************************************************9988889999*********************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +a +  ++e e+Lrv+pgEalaVn+ + lh+++desvs++++rd++L+lvkslsPkv++++eqe+++n+++F  rf e++eyy+a+f+s+
  WALNUT_00008866-RA 354 -AAMSGCEVERENLRVQPGEALAVNFPYVLHHMPDESVSTQNHRDRLLRLVKSLSPKVMTLIEQESNTNTSPFPLRFKETMEYYTAMFESI 443
                         .89999************************************************************************************* PP

                GRAS 272 .eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                          +a lpr++++ri  E+ +++r+ivn++ace +er+erhe l+kW++rl++a F+p++ls+++++ +  ll+ ++++ y++ e++g+l+l 
  WALNUT_00008866-RA 444 dAARLPRDDKQRIRAEENCVARDIVNMIACEDTERVERHEMLGKWNARLKMAEFTPLTLSSSVTNAVVDLLKLYNEN-YSIMEKDGALYLR 533
                         9999***********************************************************************55.************* PP

                GRAS 362 WkdrpLvsvSaWr 374
                         W++r + + SaWr
  WALNUT_00008866-RA 534 WRNRCMATSSAWR 546
                         ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.63150527IPR005202Transcription factor GRAS
PfamPF035141.1E-121176546IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MQTSQEHHRS ANLQGLYHQP LQDPHCLSHF QILENNMRPN IGNQGTSVSV EPSKEQFFTL  60
ESSPSTACYA VCDSPSVTSC LSNINPFSSQ VSQSYLSDPH HSPNNNHGSP VSGSSVADNG  120
YDFRHKIREV EILLLGSGPD IADSCYNSVN SGIHQFTSMS RWDWNQLVEK ISRLDLREVL  180
EYCAEAVSDN DVSLADALME VLEKRVSISG DPVQRLSAYM LEGLRARLKR SGTVIYKSLR  240
CEPTSSELMS YMSILYDICP YWKFAYISAN VVIEEVMENE PRIHIIDFQI AQGTQWMSLI  300
HSLARRPGGP PPVRITGVDD SQSAHARGGG LHIVGQKLLE FAKSRHVPFE FHAAAMSGCE  360
VERENLRVQP GEALAVNFPY VLHHMPDESV STQNHRDRLL RLVKSLSPKV MTLIEQESNT  420
NTSPFPLRFK ETMEYYTAMF ESIDAARLPR DDKQRIRAEE NCVARDIVNM IACEDTERVE  480
RHEMLGKWNA RLKMAEFTPL TLSSSVTNAV VDLLKLYNEN YSIMEKDGAL YLRWRNRCMA  540
TSSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5318354526378Protein SCARECROW
5b3h_A2e-5318354525377Protein SCARECROW
5b3h_D2e-5318354525377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018823840.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A2I4EWS00.0A0A2I4EWS0_JUGRE; scarecrow-like protein 13
STRINGXP_006467309.10.0(Citrus sinensis)
STRINGXP_006475190.10.0(Citrus sinensis)
STRINGXP_006449893.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13