PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008726-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 195aa    MW: 22836 Da    PI: 10.1732
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008726-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-077192526
                        --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                         C+ f+ +G C+  d C FaHg
  WALNUT_00008726-RA 71 ACPAFRMNGKCPKSDACEFAHG 92
                        5********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.23E-66697IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-56693IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.4836694IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-57192IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-67295IPR000571Zinc finger, CCCH-type
SMARTSM003568.8102125IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MHFPQVVTPS EFNSDHIDNA VFGTDEFRMY AFKIKRCPRV RSHDWTECPY AHRGEKAQRR  60
DPSKFNYSAI ACPAFRMNGK CPKSDACEFA HGVFEYWLHP ARYRTRACNA GKYCQRKVCF  120
FAHTPEQLRS ETKYKFHYAY RARNNGTGDR SNGNEGAISA VPPVPEQLTR KKNEILINTN  180
WKRKQKQKMK CMQAR
Functional Description ? help Back to Top
Source Description
UniProtEmbryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018831067.11e-128PREDICTED: zinc finger CCCH domain-containing protein 54
SwissprotO650366e-72C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBLA0A2I4FHE01e-126A0A2I4FHE0_JUGRE; zinc finger CCCH domain-containing protein 54
STRINGXP_010109132.15e-78(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF141721011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.11e-73C3H family protein