PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008687-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family CO-like
Protein Properties Length: 373aa    MW: 40717.5 Da    PI: 6.1696
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008687-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.68e-062052436
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                        + C+ +++  +  fC+ ++ +lC +C  ++H  
  WALNUT_00008687-RA 20 KSCDSCKSAAAATFCRADSAFLCLSCDGKIHCA 52
                        68*******9*****************999954 PP
2zf-B_box26.91e-0861107242
            zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                         + ++C+ +e+ ++   C+ +   lC +C   +H+       H++vp+
  WALNUT_00008687-RA  61 RLWMCEVCEQAPAAVTCKADAAALCVTCDADIHSAnplarrHERVPV 107
                         5789*****************************66899999999986 PP
3CCT69.77.5e-24300343144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  WALNUT_00008687-RA 300 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 343
                         9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.9541764IPR000315B-box-type zinc finger
SMARTSM003361.4E-91764IPR000315B-box-type zinc finger
CDDcd000214.68E-62264No hitNo description
PROSITE profilePS5011910.82260107IPR000315B-box-type zinc finger
PfamPF006431.1E-662107IPR000315B-box-type zinc finger
CDDcd000217.03E-963107No hitNo description
SMARTSM003363.1E-1065107IPR000315B-box-type zinc finger
PfamPF062035.7E-18300342IPR010402CCT domain
PROSITE profilePS5101716.787300342IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MGIEAESLKG FGRGWGVTAK SCDSCKSAAA ATFCRADSAF LCLSCDGKIH CANKLASRHE  60
RLWMCEVCEQ APAAVTCKAD AAALCVTCDA DIHSANPLAR RHERVPVEPF FDSADSLIKS  120
SALNNFLVVP TDQNVNASNN TTAKSETDTN HHDDAEAASW LFPNPNFSSK VMDGLDVKPS  180
DILFSEMDPF LEFDYPNPFY SAGTDSVVPV QTKPVSAAVM NHSGERCFDI DFCRSKLSVF  240
SYSTQSLSQS VSSSDVGVVP DGNSMSDISY PFGRNMSADP NVPVSGTTNQ PATQLCGSDR  300
EARVLRYREK RKNRKFEKTI RYASRKAYAE TRPRIKGRFA KRTEIETDVD CLYNSVSAAA  360
FVSDAQYGVV PTF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9282201e-58KF928220.1 Boehmeria nivea COL domain class transcription factor (COL02) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018831163.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 5 isoform X1
SwissprotQ9FHH81e-119COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A2I4FHQ00.0A0A2I4FHQ0_JUGRE; zinc finger protein CONSTANS-LIKE 5 isoform X1
STRINGXP_004167377.11e-171(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-105CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]