PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00008679-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB_related | ||||||||
Protein Properties | Length: 327aa MW: 36861.9 Da PI: 5.2174 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.2 | 1.8e-13 | 14 | 62 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT..TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmg..kgRtlkqcksrwqk 46 +g+W++eEd l+ +++q G+g +W + ++++ gRt++++k++w++ WALNUT_00008679-RA 14 KGPWSPEEDATLKAYIEQNGTGgNWIALPQKIAqlPGRTDNDIKNYWNT 62 79*********************78777777777778**********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-19 | 5 | 68 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.79E-12 | 8 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.196 | 9 | 68 | IPR017930 | Myb domain |
SMART | SM00717 | 9.4E-11 | 13 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-11 | 14 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.78E-10 | 16 | 64 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDATLKAYIE QNGTGGNWIA LPQKIAQLPG RTDNDIKNYW 60 NTRLKKKLLG RRKESNMNRF SSIGAKDAND LEDNSYSPAL SSSALERLQL HMELQSLQKP 120 LYHNNTELWP KLHPLQEKMI QSLQSLNESP THLWQHAFPS PLQPGQGQKV DFYEPPTAAI 180 IQEDFARNSN TRPVSHELEN SLHVIPSSHN SMAFVTGNNI PTDSRTLVPK ADGIEHESIA 240 GIEVSAFQAE LDDFLSNRTG GFVSHDQDHQ MVELDCFKEM NSSKDSMIWW SNIDFDTNSA 300 TSNSWDSSTS VLQSEKIFQD YELGYNL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018831084.1 | 0.0 | PREDICTED: transcription factor MYB36-like | ||||
TrEMBL | A0A2I4FHG0 | 0.0 | A0A2I4FHG0_JUGRE; transcription factor MYB36-like | ||||
STRING | EOY31764 | 1e-126 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 4e-43 | myb domain protein 36 |