PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00008619-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

C3H

Protein Properties

Length: 786aa MW: 88064 Da PI: 6.1373

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00008619-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.8	3.2e-07	172	194	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C f+++ G C GdrC F+Hgp WALNUT_00008619-RA 172 VPCIFYQK-GLCLKGDRCAFSHGP 194 69****.***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.413	108	134	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.2	110	133	IPR000571	Zinc finger, CCCH-type
Pfam	PF14608	4.6E-5	113	132	No hit	No description
SMART	SM00356	1.5E-5	168	194	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.812	168	195	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-5	169	193	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.4E-4	173	194	IPR000571	Zinc finger, CCCH-type
Pfam	PF14608	0.02	173	193	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 786 aa Download sequence Send to blast
MVGAVQQEQQ QQQQQQQEAQ RQQQQKQKQA PSAPTTSSQE EALKRNTDCV YFLASPLTCK 60 KVSKMVPSET PHRVMTSKKL TWTFCDKKSK IMLRNGSECE YRHSEFARLN PRDCWYWLNG 120 NCLNPKCSFR HPPLDASLGA QAATSVGSSL PTAQTAAMPA TNALYGSSKQ AVPCIFYQKG 180 LCLKGDRCAF SHGPSPTTSN KVPQALATNV TEPLTSKKTF GGLEKYNQEQ KIPQLNVLKP 240 AQIPPHAKSA PKAETDLPRS IVGIERNIPP PMRLEDDAFR YRATNAFPLI SGNTASRSNR 300 SEQTHVPEDH SLQNGKDADD FLRESSPGFD VLVDDELGDS DYYHGEDQFE EPRDHEGMNV 360 NSVNEYDLGN PADYNSMGDV DRPRFHVPRG HGSYNHKPGQ HAWEQHRASS ERMVVKPAHM 420 ERRRGHRESG SPDQIYESDL RYHLAKQRRV NGLRSVVSRD HAHDNNVEGQ NYGTSSRRDA 480 LHLPSNESSL GNRLRGRIML PGRSFPVNGG DLHGEKELDK GKSWGRLSPG RPQIFHGRLR 540 DRIKGRVQED FNEGRNLRSP HIRREITDDN ADFVRPKSLA ELKVVKIAES KEEQFLGKRK 600 NIDYHQQSEG HLSFEGPKPL NEILKRKRDA EVAFSGTGKL SINRGDYNQI ETKQALAGSA 660 NTAVIDTQSA KEDDVGHLLG NKEESKNTTD AIRTPTKKID EAYGSSQAPP NVDVSEAEDG 720 MVFDETVEGQ ELEGDDDQRD GDYDYEQVDD GEYNIEEGEN ADPEEYVDDE DGDGDDFAKK 780 IGVMFS

Sequence ? help Back to Top

Protein Sequence Length: 786 aa Download sequence Send to blast

MVGAVQQEQQ QQQQQQQEAQ RQQQQKQKQA PSAPTTSSQE EALKRNTDCV YFLASPLTCK  60
KVSKMVPSET PHRVMTSKKL TWTFCDKKSK IMLRNGSECE YRHSEFARLN PRDCWYWLNG  120
NCLNPKCSFR HPPLDASLGA QAATSVGSSL PTAQTAAMPA TNALYGSSKQ AVPCIFYQKG  180
LCLKGDRCAF SHGPSPTTSN KVPQALATNV TEPLTSKKTF GGLEKYNQEQ KIPQLNVLKP  240
AQIPPHAKSA PKAETDLPRS IVGIERNIPP PMRLEDDAFR YRATNAFPLI SGNTASRSNR  300
SEQTHVPEDH SLQNGKDADD FLRESSPGFD VLVDDELGDS DYYHGEDQFE EPRDHEGMNV  360
NSVNEYDLGN PADYNSMGDV DRPRFHVPRG HGSYNHKPGQ HAWEQHRASS ERMVVKPAHM  420
ERRRGHRESG SPDQIYESDL RYHLAKQRRV NGLRSVVSRD HAHDNNVEGQ NYGTSSRRDA  480
LHLPSNESSL GNRLRGRIML PGRSFPVNGG DLHGEKELDK GKSWGRLSPG RPQIFHGRLR  540
DRIKGRVQED FNEGRNLRSP HIRREITDDN ADFVRPKSLA ELKVVKIAES KEEQFLGKRK  600
NIDYHQQSEG HLSFEGPKPL NEILKRKRDA EVAFSGTGKL SINRGDYNQI ETKQALAGSA  660
NTAVIDTQSA KEDDVGHLLG NKEESKNTTD AIRTPTKKID EAYGSSQAPP NVDVSEAEDG  720
MVFDETVEGQ ELEGDDDQRD GDYDYEQVDD GEYNIEEGEN ADPEEYVDDE DGDGDDFAKK  780
IGVMFS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018823943.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 17
TrEMBL	A0A2I4EX27	0.0	A0A2I4EX27_JUGRE; zinc finger CCCH domain-containing protein 17
STRING	XP_008220996.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9227	31	37