PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00008554-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 29959 Da PI: 8.9427 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.5 | 9.5e-16 | 19 | 65 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + W +eEd++l+++v+ +G g+W+t++++ g+ R +k+c++rw +yl WALNUT_00008554-RA 19 NLWKPEEDLILKNYVETHGEGNWATVSKRSGLMRGGKSCRLRWKNYL 65 56*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.4 | 2.9e-17 | 71 | 116 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE++l+v+ +k+lG++ W++Ia +++ gRt++++k++w+++l WALNUT_00008554-RA 71 RGEMSKEEEDLIVRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 116 8999******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-21 | 12 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.199 | 13 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.12E-28 | 15 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-12 | 17 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-14 | 19 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.76E-9 | 21 | 65 | No hit | No description |
PROSITE profile | PS51294 | 26.181 | 66 | 120 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-23 | 69 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-17 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-15 | 71 | 116 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.80E-11 | 73 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MHRPGVMEVK RVKPQLKKNL WKPEEDLILK NYVETHGEGN WATVSKRSGL MRGGKSCRLR 60 WKNYLRPNIK RGEMSKEEED LIVRMHKLLG NRWSLIAGRL PGRTDNEVKN YWNTHLNKKS 120 LIIGKRKTTE PDHKQREDKD ENMNREKKIR PWCTDHSEPS GSAICLTRTR SQSDLGLDER 180 NMINKEEKDQ AESTFTNPWI NIDDPNSFNC EIEYPMLITG NSNNNARLVF DDEPLIAYLD 240 SFILFEAFGC DGERVGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-23 | 10 | 119 | 19 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018826719.1 | 0.0 | PREDICTED: transcription factor TT2-like | ||||
TrEMBL | A0A2I4F505 | 0.0 | A0A2I4F505_JUGRE; transcription factor TT2-like | ||||
STRING | POPTR_0018s12780.1 | 2e-90 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13545 | 20 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 5e-65 | myb domain protein 82 |