PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00008492-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bHLH | ||||||||
Protein Properties | Length: 339aa MW: 38281.8 Da PI: 4.9247 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.4 | 1.1e-12 | 131 | 182 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P + + ++ + a+i A++++k+L+ WALNUT_00008492-RA 131 QRMTHIAVERNRRKQMNEYLSMLRSLMPDS---YIQRGDQASIIGGAINFVKELE 182 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-13 | 129 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.06E-13 | 129 | 186 | No hit | No description |
SuperFamily | SSF47459 | 5.37E-16 | 130 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.32 | 130 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.8E-10 | 131 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.4E-10 | 136 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MALEAVVFPQ DPFAYSTTGY NFLASGGNWS YDFVPQNEDE QQAGAFDSLE NQTENCLYGG 60 YHSSTPSMQV PAHDLNELHN YDPSTLDANN DTVLIANETH HVDHMSMTTM PTRPKRRRAK 120 SRKNKEEIEN QRMTHIAVER NRRKQMNEYL SMLRSLMPDS YIQRGDQASI IGGAINFVKE 180 LEQRLQLLGA QKESEEKCDA GDVSLPFSEF FTFPQYSTSS STNYYCDNYS VAAMSEQVGE 240 STQSAAIADI EVTMVESHAN LKIRSKRRPK QLLKVVSGLH TMRLTVLHLN VTTADEVVLY 300 SLSVKVEDDC KLSSVDEIAT AVHQMLGRIQ EDQEILLNY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 142 | RMTHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF144506 | 2e-72 | EF144506.1 Populus trichocarpa clone PX0019_N17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018841767.1 | 0.0 | PREDICTED: transcription factor bHLH94-like | ||||
TrEMBL | A0A2I4GCZ2 | 0.0 | A0A2I4GCZ2_JUGRE; transcription factor bHLH94-like | ||||
STRING | XP_007147072.1 | 1e-137 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF718 | 34 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 2e-81 | bHLH family protein |