PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00008463-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | Dof | ||||||||
Protein Properties | Length: 345aa MW: 36191.2 Da PI: 8.3612 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.5 | 3e-38 | 73 | 132 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++alkcprC+stntkfCy+nnysl+qPr++Ck+CrryWt+GGalrnvPvGgg+r+nk+s+ WALNUT_00008463-RA 73 DTALKCPRCESTNTKFCYFNNYSLTQPRHLCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 132 7789*****************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-30 | 60 | 121 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.7E-32 | 74 | 130 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.096 | 76 | 130 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 78 | 114 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MVFSSIPAYL DPANWQQQQN HDPFGTSTTS SSQLLPPPQP LSPPPIPHGG GPGSIRPGSM 60 ADRARQANIP LPDTALKCPR CESTNTKFCY FNNYSLTQPR HLCKTCRRYW TRGGALRNVP 120 VGGGCRRNKR SKGSSSKSPA SSTDRQSASA GSTSSIPSNG GPTADIIGIS PQIPQLHYMT 180 PLHQLPDFAA GEIPLNYGLN YGTISAPMGL AGDLNFQIGS AGTAGDGGSL LSAGAYEQWR 240 LQQAQQFPFL GGLDPSLGLF GSSVEASSYV GGGVSQAPAA KASSLGVSTH DQVAEASVKM 300 EESQELNLSR QFLGMPGNDP FWGGSATAWT DLSGFSSSST TRNPL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018841679.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.1-like | ||||
TrEMBL | A0A2I4GCN8 | 0.0 | A0A2I4GCN8_JUGRE; dof zinc finger protein DOF5.1-like | ||||
STRING | EOY07547 | 1e-118 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF656 | 34 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37590.1 | 2e-40 | DNA binding with one finger 2.4 |