PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008377-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family AP2
Protein Properties Length: 755aa    MW: 82031.7 Da    PI: 6.6175
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008377-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2353.6e-11304360155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  WALNUT_00008377-RA 304 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 360
                         57*******************4444.2455535555.779999**************98 PP
2AP246.11.2e-14403454155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  WALNUT_00008377-RA 403 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 454
                         57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.10E-19304370No hitNo description
SuperFamilySSF541711.05E-14304370IPR016177DNA-binding domain
PfamPF008471.3E-8304360IPR001471AP2/ERF domain
PROSITE profilePS5103217.319305368IPR001471AP2/ERF domain
SMARTSM003801.9E-22305374IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-12305370IPR001471AP2/ERF domain
PRINTSPR003675.0E-6306317IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18403463IPR016177DNA-binding domain
PfamPF008474.0E-10403454IPR001471AP2/ERF domain
CDDcd000183.86E-25403462No hitNo description
PROSITE profilePS5103219.151404462IPR001471AP2/ERF domain
SMARTSM003801.9E-33404468IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-18404462IPR001471AP2/ERF domain
PRINTSPR003675.0E-6444464IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MAPMINWLGF SLSPQELPSQ TADQDAYSQN TVSRLSFMNS DNISGADVSV QCFDLTSDST  60
APSLNLPPPF GILEAFNRND QVEDWNMKGL GMNSSTNYKT TSELSMLMGS SCNSQNHDQN  120
QHRPKLENFL GRHSFDHHEN AAYNNNNGDC IFNNCSLQLP SEAGNGVANS TGSTGGGGIH  180
ENSSNIGLSM IKTWLRNQRS PAPPQPENNK DDSCGGASSG NNINGSCIMT SAQTLSLSMG  240
TGPPQSSSNL PLLIASTGSG GESNSSSDNK QQKITSGLDT QSSSAIEAAT VPRKSIDTFG  300
QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE GQTRKGRQGG YDKEEKAARA YDLAALKYWG  360
TTTTTNFPMS NYEKELEEMK HMTRLEYVAS LRRKSSGFSR GASIYRGVTR HHQHGRWQAR  420
IGRVAGNKDL YLGTFSTQEE AAEAYDVAAI KFRGLNAVTN FDMNRYDVKS ILESSTLPIG  480
GAAKRLKDAH EQAEMTLLEG QIIKTDHDHD NISSQLTHGI NSYGTGAAHH GSWPTIAFQQ  540
PPQPYSTINY PYHGQRLWCK QEQDSDHLPP NSFQDLDHHH HLQLGNTHNF FQPNSTVLHN  600
LMSMDTASME HSSGSNSVIY SSQGGGDGNN GTEIGGYGAN GTAGYAIPVS TVIANNDGNQ  660
NQGNNASSFG DSEVVKALAY NQSLYSAADP YHARNMYYLS QHASVAGVVK ASAYDQGSTC  720
NNWPVPTAVP TLAAARSSNL AVCHAAPTFT VWNDT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018828979.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM isoform X4
SwissprotQ8LSN21e-142BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2I4FBE90.0A0A2I4FBE9_JUGRE; AP2-like ethylene-responsive transcription factor BBM isoform X4
STRINGEOY097220.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-134AP2 family protein