PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00008109-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Protein Properties

Length: 328aa MW: 37215.6 Da PI: 9.5099

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00008109-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	27.2	1e-08	26	64	6	44
HHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHH CS HSF_DNA-bind 6 lyeiledeelkeliswsengnsfvvldeeefakkvLpky 44 y +++++e+++++sws+ n+fvv+++ efa k+Lpk+ WALNUT_00008109-RA 26 FYAMVDNPETNSVVSWSDGDNNFVVWNPYEFAAKLLPKH 64 599*********************************975 PP
2	B3	35	2.6e-11	223	312	1	82
EEEE-..-HHHHT.T-EE--HHH.HTT.........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh.........ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+k+ltp dv + +rl++ k +e++ +++ +++ +t++d +g ++ +++++ + + + +vlt+GW++F+k+++L+ + + WALNUT_00008109-RA 223 FEKQLTPTDVRTDqCRLSFNKADVENFllpllnksdDLV--RGTPVTVYDMNGrKECSMTFKRWAS-KFHVLTEGWNKFCKEHELRKYEDF 310 99******9988******888999966555..6667999998884555555543555.58***************965544 PP EE CS B3 81 vF 82 v WALNUT_00008109-RA 311 VT 312 44 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	7.4E-4	22	114	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.12E-7	26	66	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	6.1E-9	27	65	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	5.4E-6	27	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding
CDD	cd10017	2.22E-13	223	312	No hit	No description
SMART	SM01019	1.2E-4	223	327	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.35E-13	223	307	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.6E-14	223	306	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	3.0E-7	223	311	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016020	Cellular Component	membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MGEFVDSLLT NATGINETLR FGRIGFYAMV DNPETNSVVS WSDGDNNFVV WNPYEFAAKL 60 LPKHKNLAIG PEPRKRRDRH SFQNLLPLRS MNHSRPPLRD SPLTHSLSDL IILEGKGIMA 120 GKRKLSEWVN GKEVNLEEFS EEFRAAMTLL AIKHAKADEK IAMALLERAK RSRFTEEHAK 180 TKPKPIQSSH SQTYQHFGPY SPPDCPPVPS LSGLIIGACS KPFEKQLTPT DVRTDQCRLS 240 FNKADVENFL LPLLNKSDDL VRGTPVTVYD MNGRKECSMT FKRWASKFHV LTEGWNKFCK 300 EHELRKYEDF VTKLKAQQAP LGLATTSL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018834012.1	1e-142	PREDICTED: uncharacterized protein LOC109001266
TrEMBL	A0A2I4FQT8	1e-141	A0A2I4FQT8_JUGRE; uncharacterized protein LOC109001266
STRING	EOY30697	3e-45	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4148	19	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20600.1	6e-18	B3 family protein