PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00008084-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | Whirly | ||||||||
Protein Properties | Length: 222aa MW: 24087.6 Da PI: 9.3972 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 159 | 1.4e-49 | 54 | 182 | 1 | 137 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvr 91 sv+k+kaal+v +v+ptf++ldsg+++++r+G +++++ +a++erkyd ek+q+ als+tev++l++l++++sce+fhdp++k+sn+G+vr WALNUT_00008084-RA 54 SVFKGKAALSVTPVLPTFTKLDSGSVVVDRRGVMMFKFLPAIGERKYDNEKRQVIALSVTEVGSLISLGPQDSCEMFHDPSMKSSNAGQVR 144 79***************************************************************************************** PP Whirly 92 kalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 k+l+++P++d v n+++k++e+f+vPv+ aef+v++++ WALNUT_00008084-RA 145 KSLSIKPHADA--------VVNNILKTKEYFTVPVTTAEFSVMKTA 182 **********5........77889********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 1.9E-64 | 43 | 200 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 2.28E-58 | 47 | 207 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 5.9E-49 | 55 | 181 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MGNLLSGKLL YGKSGDVKDA SCLHAFTVHA GISTSRENSA AEGYAAQRIF ASYSVFKGKA 60 ALSVTPVLPT FTKLDSGSVV VDRRGVMMFK FLPAIGERKY DNEKRQVIAL SVTEVGSLIS 120 LGPQDSCEMF HDPSMKSSNA GQVRKSLSIK PHADAVVNNI LKTKEYFTVP VTTAEFSVMK 180 TACSFALPHI LGWGRLTNQL PRGTEGQPSK VDSQLLDLEW DK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4kop_A | 5e-78 | 48 | 200 | 10 | 170 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_B | 5e-78 | 48 | 200 | 10 | 170 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_C | 5e-78 | 48 | 200 | 10 | 170 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_D | 5e-78 | 48 | 200 | 10 | 170 | Single-stranded DNA-binding protein WHY2, mitochondrial |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018834183.1 | 1e-160 | PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial | ||||
Swissprot | D9J034 | 6e-87 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A2I4FRC2 | 1e-159 | A0A2I4FRC2_JUGRE; single-stranded DNA-bindig protein WHY2, mitochondrial | ||||
STRING | XP_004290267.1 | 1e-101 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11383 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 1e-84 | WHIRLY 2 |