PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00008063-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NAC

Protein Properties

Length: 385aa MW: 43683.7 Da PI: 7.2597

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00008063-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.7	4.6e-53	11	140	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgk 88 +ppGfrFhPtdeel+++yLkkkv+ +k+e+ +vi+evd++k+ePwdL++++k ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+ WALNUT_00008063-RA 11 VPPGFRFHPTDEELLHYYLKKKVAFQKFEM-DVIREVDLNKMEPWDLQERCKIgstPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGR 100 69**************************.9***********964444222455**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 dk + + + +++g++ktLvfy+grap+g+k+dW+mheyrle WALNUT_00008063-RA 101 DKCIRN-SYKKIGMRKTLVFYRGRAPHGQKADWIMHEYRLE 140 *9.8999**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-59	8	163	IPR003441	NAC domain
PROSITE profile	PS51005	57.712	11	163	IPR003441	NAC domain
Pfam	PF02365	1.8E-27	12	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048829	Biological Process	root cap development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MAAASSSTGG VPPGFRFHPT DEELLHYYLK KKVAFQKFEM DVIREVDLNK MEPWDLQERC 60 KIGSTPQNEW YFFSHKDRKY PTGSRTNRAT NAGFWKATGR DKCIRNSYKK IGMRKTLVFY 120 RGRAPHGQKA DWIMHEYRLE DGDDPQGNSN AEDGWVVCRV FKKKNLFKVG SAGGGSSMNS 180 GQQLNTALSN NQPRFFMHRS ENQYLAHQHH NNGNQPSFEP ELALHQYSHI PAISQYSLFQ 240 SQPGLFPTVD HKPQLGFDYS IQLPNNSESP IMVKQLMSNP RDCESGSESL RYQVANSCEP 300 GSLEVDTCSE PAVAQQMVTG RSEVEGMHEW AMLGRHLVTS DHHDLGNEEY SSKGVRFEDV 360 NASSSVNQIN PLSLRGEMDF WGYGK

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MAAASSSTGG VPPGFRFHPT DEELLHYYLK KKVAFQKFEM DVIREVDLNK MEPWDLQERC  60
KIGSTPQNEW YFFSHKDRKY PTGSRTNRAT NAGFWKATGR DKCIRNSYKK IGMRKTLVFY  120
RGRAPHGQKA DWIMHEYRLE DGDDPQGNSN AEDGWVVCRV FKKKNLFKVG SAGGGSSMNS  180
GQQLNTALSN NQPRFFMHRS ENQYLAHQHH NNGNQPSFEP ELALHQYSHI PAISQYSLFQ  240
SQPGLFPTVD HKPQLGFDYS IQLPNNSESP IMVKQLMSNP RDCESGSESL RYQVANSCEP  300
GSLEVDTCSE PAVAQQMVTG RSEVEGMHEW AMLGRHLVTS DHHDLGNEEY SSKGVRFEDV  360
NASSSVNQIN PLSLRGEMDF WGYGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-51	11	165	17	167	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-51	11	165	17	167	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-51	11	165	17	167	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-51	11	165	17	167	NO APICAL MERISTEM PROTEIN
3swm_A	5e-51	11	165	20	170	NAC domain-containing protein 19
3swm_B	5e-51	11	165	20	170	NAC domain-containing protein 19
3swm_C	5e-51	11	165	20	170	NAC domain-containing protein 19
3swm_D	5e-51	11	165	20	170	NAC domain-containing protein 19
3swp_A	5e-51	11	165	20	170	NAC domain-containing protein 19
3swp_B	5e-51	11	165	20	170	NAC domain-containing protein 19
3swp_C	5e-51	11	165	20	170	NAC domain-containing protein 19
3swp_D	5e-51	11	165	20	170	NAC domain-containing protein 19
4dul_A	4e-51	11	165	17	167	NAC domain-containing protein 19
4dul_B	4e-51	11	165	17	167	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00431	DAP	Transfer from AT4G10350	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018834017.1	0.0	PREDICTED: protein BEARSKIN2-like
Swissprot	Q9SV87	1e-146	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A2I4FQU3	0.0	A0A2I4FQU3_JUGRE; protein BEARSKIN2-like
STRING	XP_008391860.1	1e-180	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8752	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	1e-146	NAC domain containing protein 70

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]