PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008042-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family CO-like
Protein Properties Length: 373aa    MW: 41314.9 Da    PI: 5.039
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008042-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.73.7e-062060438
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                        r+C+++ +   + +C+ ++ +lC  C   +H        H+
  WALNUT_00008042-RA 20 RVCDTCRSAACTVYCRADSAYLCTGCDARIHAAnlvasrHE 60
                        79******99*********************6566666676 PP
2zf-B_box284.4e-0962107342
            zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                          ++C+ +e+ ++ + C+ +   lC  C   +H+       H +vp+
  WALNUT_00008042-RA  62 VWVCEACERAPAAFICKADAASLCTACDADIHSAnplasrHHRVPI 107
                         689*****************************66899999877775 PP
3CCT70.44.6e-24304347144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  WALNUT_00008042-RA 304 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 347
                         9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.3E-81764IPR000315B-box-type zinc finger
PROSITE profilePS5011910.1821764IPR000315B-box-type zinc finger
CDDcd000215.63E-72064No hitNo description
PROSITE profilePS5011910.83660107IPR000315B-box-type zinc finger
PfamPF006434.8E-761107IPR000315B-box-type zinc finger
CDDcd000214.86E-863107No hitNo description
SMARTSM003367.9E-965107IPR000315B-box-type zinc finger
PfamPF062037.2E-18304346IPR010402CCT domain
PROSITE profilePS5101716.648304346IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MMKEEISNGG DGGGGNNWAR VCDTCRSAAC TVYCRADSAY LCTGCDARIH AANLVASRHE  60
RVWVCEACER APAAFICKAD AASLCTACDA DIHSANPLAS RHHRVPILPI SGCLPGPPAA  120
DPVDGFLAHD DGDETIDEED EDEAASWLLL NPVKNNYNQN NGFLFGGDVE EYVDFVEYNS  180
CADQNQFEDQ YNYDQQQHYA VPQKSYGGDS VVPVQNGDVK VQLHHQPQQQ DFQLGLDFES  240
SKSTYSYHGS ISHSVSVSSM DVGVVPESTM IDISISHPRT PKGTIDLFSG PPLQMPHQLT  300
PLDREARVLR YREKKKTRKF EKTIRYASRK AYAETRPRIK GRFAKRTDVE VEVDQMFSTT  360
LMAETGYGIV PSF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018834143.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-153COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A2I4FR880.0A0A2I4FR88_JUGRE; zinc finger protein CONSTANS-LIKE 2-like
STRINGGorai.008G059900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-121CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]