PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00007907-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 341aa    MW: 38520.2 Da    PI: 6.7006
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00007907-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-13131182155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A++++k+L+
  WALNUT_00007907-RA 131 QRMTHIAVERNRRKQMNEYLALLRSLMPPS---YVQRSDQASIVGGAINFVKELE 182
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-17129205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.82E-13129186No hitNo description
Gene3DG3DSA:4.10.280.108.2E-13130186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.37130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-11131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-11136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MALEAVVYPK DPFSYGCKDF YYFGGGGGGA GGVWGCENLA LQEDDSAFHG VSHHNIVNIE  60
EGVHEHANMD SSSPSLMQNV KEYYWDPNSS NSPETCTDDQ SFARVTPAAT TARRKRRRTK  120
SSKNEVEIEN QRMTHIAVER NRRKQMNEYL ALLRSLMPPS YVQRSDQASI VGGAINFVKE  180
LEQLLQSMEV YKRRKQEQES QSSPPFSQFF IFPQYSTGTA HHCNKSSATD HQNESMAQNI  240
NDHQYCAAVA DIEVNMVESH ANLKILSKKV HPRQLWKILS GFQILRLTVL HLNVVTSKAD  300
QMVLYSFSVK VEEGCQMNTV DEIAAAVNQM LRRIQEEAAF T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113117RKRRR
2113118RKRRRT
3131142RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018833943.10.0PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T43e-84BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2I4FQN90.0A0A2I4FQN9_JUGRE; transcription factor bHLH96-like
STRINGXP_010272971.11e-126(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-79bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]