PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00007863-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

SBP

Protein Properties

Length: 1036aa MW: 115227 Da PI: 7.3585

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00007863-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.4	3.2e-41	148	225	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+adls+ak+yhrrhkvC++hska+++lv + +qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ WALNUT_00007863-RA 148 VCQVEGCKADLSNAKDYHRRHKVCDMHSKATKALVGNDMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 225 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.5E-34	143	210	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.394	146	223	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.7E-38	147	228	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.6E-29	149	222	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	3.45E-7	803	918	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.9E-6	805	917	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.74E-6	807	917	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1036 aa Download sequence Send to blast
MEAKFRGKAH QLYGQVVSDL KAVGKRSLEW DLNDWKWDGD LFTASRLNSV PSDCRSRQLF 60 PVGPEIPENA GLSNSSSSGS DEINLVNDGG KRELEKRRRV VEVEDEELND EAGSFNLKLG 120 GQAYPVTEGE LKSGKKTKIV GTTSNPAVCQ VEGCKADLSN AKDYHRRHKV CDMHSKATKA 180 LVGNDMQRFC QQCSRFHVLQ EFDEGKRSCR RRLAGHNRRR RKTHPDTVAS GGCLNAERGT 240 SYILISLLRI LSNIHSNSSD QTKDQDLLSH LLRNLASLTG TVDGRNISAL LEGSQGLLNA 300 GTSTGSSQKV PDVTPNGSES SRPFCSTSKM DDHINLHDHP ISVGQCVTAF TSDMAQKRIS 360 LDDSQGGHLK AISGLQYKNP PPSKDGLPSK SIISETKVGR IKLNNIDLNN VYEDSEDHIE 420 QVGRSHAPIN SGTGFLGHPL WVQQDSHKSS PPQPSGNSDS TSSRSPSSSS GDAQSRTDRI 480 VFKLFGKDPN NFPLVLRTQI LDWLSHSPTD MESYIRPGCI ILTIYLRLEK SMWEELCCDL 540 GSYLKGLLGS CNDSFWRTGW VYTRVRHRVA FMYNGQVVLD TPLPLKSNKN CRISSIKPIA 600 VSTSERVQFV VKGFNLSRST ARLLCAQEGK YLVQETCYDL MDSADTAIEH DELQCLSFPC 660 SIPNVIGRGF IEVEDHGLSS SFFPFIVAEQ EVCSEICTLE HAIEVAENAD EIQRVPELLE 720 AKTQALDFIH EIGWLLHRSH VKFRLGDVDP NPDLFPLKRF EWLVAFSMDH DWCAVVNKLL 780 KILFEGVVDA GDHPSIELAL LDLDLLHRAV QRNCRPMVEL LLRFVPDKVS DGRGAQEKQQ 840 VDRASSGFLF KPNMVGPAGL TPLHVAASMD GSENVLDALT DDPGSVGIEA WKSVRDSTGL 900 TPNDYACLRG YYSYIHLVQK KFSKKMERRH VVLDIPGAVL DYNNKRKQSD GHKLSKVACL 960 QTEKIEIGAT YRHCKICEQK LSYGSMRRSL VYQPAILSMV AIAAVCVCVA LLFKSSPEVL 1020 YVFRPFRWEL LKYGSS

Sequence ? help Back to Top

Protein Sequence Length: 1036 aa Download sequence Send to blast

MEAKFRGKAH QLYGQVVSDL KAVGKRSLEW DLNDWKWDGD LFTASRLNSV PSDCRSRQLF  60
PVGPEIPENA GLSNSSSSGS DEINLVNDGG KRELEKRRRV VEVEDEELND EAGSFNLKLG  120
GQAYPVTEGE LKSGKKTKIV GTTSNPAVCQ VEGCKADLSN AKDYHRRHKV CDMHSKATKA  180
LVGNDMQRFC QQCSRFHVLQ EFDEGKRSCR RRLAGHNRRR RKTHPDTVAS GGCLNAERGT  240
SYILISLLRI LSNIHSNSSD QTKDQDLLSH LLRNLASLTG TVDGRNISAL LEGSQGLLNA  300
GTSTGSSQKV PDVTPNGSES SRPFCSTSKM DDHINLHDHP ISVGQCVTAF TSDMAQKRIS  360
LDDSQGGHLK AISGLQYKNP PPSKDGLPSK SIISETKVGR IKLNNIDLNN VYEDSEDHIE  420
QVGRSHAPIN SGTGFLGHPL WVQQDSHKSS PPQPSGNSDS TSSRSPSSSS GDAQSRTDRI  480
VFKLFGKDPN NFPLVLRTQI LDWLSHSPTD MESYIRPGCI ILTIYLRLEK SMWEELCCDL  540
GSYLKGLLGS CNDSFWRTGW VYTRVRHRVA FMYNGQVVLD TPLPLKSNKN CRISSIKPIA  600
VSTSERVQFV VKGFNLSRST ARLLCAQEGK YLVQETCYDL MDSADTAIEH DELQCLSFPC  660
SIPNVIGRGF IEVEDHGLSS SFFPFIVAEQ EVCSEICTLE HAIEVAENAD EIQRVPELLE  720
AKTQALDFIH EIGWLLHRSH VKFRLGDVDP NPDLFPLKRF EWLVAFSMDH DWCAVVNKLL  780
KILFEGVVDA GDHPSIELAL LDLDLLHRAV QRNCRPMVEL LLRFVPDKVS DGRGAQEKQQ  840
VDRASSGFLF KPNMVGPAGL TPLHVAASMD GSENVLDALT DDPGSVGIEA WKSVRDSTGL  900
TPNDYACLRG YYSYIHLVQK KFSKKMERRH VVLDIPGAVL DYNNKRKQSD GHKLSKVACL  960
QTEKIEIGAT YRHCKICEQK LSYGSMRRSL VYQPAILSMV AIAAVCVCVA LLFKSSPEVL  1020
YVFRPFRWEL LKYGSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-29	143	222	5	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	99	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018833859.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
Swissprot	Q9S7P5	0.0	SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBL	A0A2I4FQD0	0.0	A0A2I4FQD0_JUGRE; squamosa promoter-binding-like protein 1
STRING	XP_008223488.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]