PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00007848-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 407aa    MW: 45191.8 Da    PI: 8.3088
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00007848-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-1765113148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+W++eEd +l+ +++q+G+g +W + ++++g++R++k+c++rw++yl
  WALNUT_00007848-RA  65 KGPWSPEEDNKLKSYIEQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 113
                         79*********************************************97 PP
2Myb_DNA-binding37.74.7e-12120162246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g +++eEd+++  +    G++ W+ Ia+ ++ gRt++++k++w++
  WALNUT_00007848-RA 120 GGFSEEEDDIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 162
                         569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.57660113IPR017930Myb domain
SuperFamilySSF466891.13E-2662160IPR009057Homeodomain-like
SMARTSM007173.6E-1364115IPR001005SANT/Myb domain
PfamPF002494.0E-1665113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-2566120IPR009057Homeodomain-like
CDDcd001672.78E-1067113No hitNo description
PROSITE profilePS5129421.611114168IPR017930Myb domain
SMARTSM007174.3E-11118166IPR001005SANT/Myb domain
PfamPF002491.2E-10120162IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-23121168IPR009057Homeodomain-like
CDDcd001674.72E-8122164No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MLILFRKPCL SFSFFNPPCP SLSFSPSLSS ISYWILEREA IASGSNQHQD NMGRAPCCDK  60
ANVKKGPWSP EEDNKLKSYI EQHGTGGNWI ALPQKIGLKR CGKSCRLRWL NYLRPNIKHG  120
GFSEEEDDII CSLYISIGSR WSIIAAQLPG RTDNDIKNYW NTRLKKKLLG KQRKEQQAAR  180
RGSSIKQEMM KRSGGGSSMV PNSSNNQNPQ WAPGLPPALL APIPYSNQEP RVNDHASIRK  240
LLIKLGGRFS QDDLPIQLHG TSTHHFANYN TSSTGQQIYQ AVNIPTSPTD AFNSTGSATQ  300
FAQAQSYVDE AELNVLQGKI NSFPAELDHQ EIVYNNPQGL DGLEFLCGEG MVDNIRIGTS  360
ISGTESNFWG EMSSLVYPPV ASNYGGMQQG TDLQECAFGE LRYHRAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24651687108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9702621e-143JF970262.1 Quercus suber R2R3-MYB transcription factor MYB1.1 (MYB1) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018833816.10.0PREDICTED: transcription factor RAX3-like isoform X1
SwissprotQ9M2Y92e-82RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A2I4FQ940.0A0A2I4FQ94_JUGRE; transcription factor RAX3-like isoform X1
STRINGcassava4.1_011054m1e-153(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.15e-76myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]