PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00007816-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | Dof | ||||||||
Protein Properties | Length: 242aa MW: 24917.4 Da PI: 5.7448 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.8 | 2e-37 | 26 | 83 | 3 | 60 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++ l+cprC st tkfCyynny+lsqPr+fCk+CrryWt+GG+lrnvPvGgg+rk+ + WALNUT_00007816-RA 26 TQPLPCPRCGSTSTKFCYYNNYNLSQPRHFCKSCRRYWTQGGTLRNVPVGGGTRKSIA 83 68899**************************************************854 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 2.9E-32 | 27 | 81 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.807 | 29 | 83 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 31 | 67 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 9.0E-22 | 33 | 81 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MPSETADEKP AARLQQSFGY PPPPQTQPLP CPRCGSTSTK FCYYNNYNLS QPRHFCKSCR 60 RYWTQGGTLR NVPVGGGTRK SIAKRSRSNT STSSCSSSSS SSAVNSEALP SNTSPVLPEM 120 VSHDVNLNEN VATVGGAVGS FNFLLNSQGP AGFLGLSGTY GYGSTIPGFE EMSLGLAGAG 180 AWAFPEVGDF GGGSGIGTSL ASAAYGTWQV SGADDQGGLV DGGDSFASPD LSISTPGQGL 240 DK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT087500 | 8e-34 | BT087500.1 Zea mays full-length cDNA clone ZM_BFb0096C05 mRNA, complete cds. | |||
GenBank | EU966429 | 8e-34 | EU966429.1 Zea mays clone 294453 mRNA sequence. | |||
GenBank | EU974720 | 8e-34 | EU974720.1 Zea mays clone 456844 dof zinc finger protein MNB1A mRNA, complete cds. | |||
GenBank | JX428529 | 8e-34 | JX428529.1 Zea mays subsp. mays clone pUT3129 DOF16 C2C2-DOF type transcription factor mRNA, partial cds. | |||
GenBank | X79934 | 8e-34 | X79934.1 Z.mays Dof2 mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018822414.1 | 1e-176 | PREDICTED: dof zinc finger protein DOF1.6-like | ||||
TrEMBL | A0A2I4ESQ1 | 1e-175 | A0A2I4ESQ1_JUGRE; dof zinc finger protein DOF1.6-like | ||||
STRING | POPTR_0007s11790.1 | 4e-60 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2801 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50410.1 | 2e-32 | OBF binding protein 1 |