PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00007742-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB | ||||||||
Protein Properties | Length: 313aa MW: 35712.4 Da PI: 9.5881 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31 | 5.7e-10 | 28 | 74 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WT+eE +++ +a +++ ++ +W ++a++++ g+t ++k + k+ WALNUT_00007742-RA 28 KWTPEENKQFENALALYDKDtpdRWLKVAAMIP-GKTIGDVKKQYKKL 74 8********************************.***********986 PP | |||||||
2 | Myb_DNA-binding | 46.8 | 6.9e-15 | 138 | 182 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + +++G+g+W+ I+r + ++Rt+ q+ s+ qky WALNUT_00007742-RA 138 PWTEEEHRQFLMGLQKYGKGDWRNISRNFVTTRTPTQVASHAQKY 182 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-5 | 22 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 8.219 | 24 | 79 | IPR017884 | SANT domain |
SMART | SM00717 | 1.7E-10 | 25 | 77 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.66E-12 | 27 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.99E-8 | 28 | 74 | No hit | No description |
Pfam | PF00249 | 1.6E-8 | 28 | 74 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.06 | 131 | 187 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.66E-17 | 133 | 186 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.8E-18 | 134 | 186 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.8E-13 | 135 | 182 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-13 | 135 | 185 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-12 | 138 | 182 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.60E-11 | 138 | 183 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MNREIEILSP ASYLQNSNWL FQESKGTKWT PEENKQFENA LALYDKDTPD RWLKVAAMIP 60 GKTIGDVKKQ YKKLEEDVSD IEAGLIPISG YDNTSNNSFT LEWVNNQGFA GLKQFYSVGG 120 KRGTLIRPSD QERKKGVPWT EEEHRQFLMG LQKYGKGDWR NISRNFVTTR TPTQVASHAQ 180 KYFIRQLTGG KDKRRSSIHD ITTVNVPDTK PAPLLDGRRP PSPDHPVMVM QPLRRPKTAG 240 MDDRHEQYDW KPPYEATPMV FNPANGNIFV APFCGISSYG PKLQEQNLLG GTVPGSQFGH 300 YNTMFQMHPM QYQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-17 | 26 | 102 | 8 | 84 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00296 | DAP | Transfer from AT2G38090 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018825920.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-107 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2I4F2P5 | 0.0 | A0A2I4F2P5_JUGRE; transcription factor DIVARICATA-like | ||||
STRING | POPTR_0016s11980.1 | 1e-171 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF466 | 34 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-124 | MYB family protein |
Publications ? help Back to Top | |||
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