PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00007742-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 313aa    MW: 35712.4 Da    PI: 9.5881
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00007742-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding315.7e-102874347
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                        +WT+eE +++ +a +++ ++   +W ++a++++ g+t  ++k  + k+
  WALNUT_00007742-RA 28 KWTPEENKQFENALALYDKDtpdRWLKVAAMIP-GKTIGDVKKQYKKL 74
                        8********************************.***********986 PP

2Myb_DNA-binding46.86.9e-15138182347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+ +++ + +++G+g+W+ I+r + ++Rt+ q+ s+ qky
  WALNUT_00007742-RA 138 PWTEEEHRQFLMGLQKYGKGDWRNISRNFVTTRTPTQVASHAQKY 182
                         8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-52274IPR009057Homeodomain-like
PROSITE profilePS512938.2192479IPR017884SANT domain
SMARTSM007171.7E-102577IPR001005SANT/Myb domain
SuperFamilySSF466899.66E-122781IPR009057Homeodomain-like
CDDcd001672.99E-82874No hitNo description
PfamPF002491.6E-82874IPR001005SANT/Myb domain
PROSITE profilePS5129420.06131187IPR017930Myb domain
SuperFamilySSF466891.66E-17133186IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-18134186IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.8E-13135182IPR009057Homeodomain-like
SMARTSM007173.9E-13135185IPR001005SANT/Myb domain
PfamPF002491.8E-12138182IPR001005SANT/Myb domain
CDDcd001676.60E-11138183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MNREIEILSP ASYLQNSNWL FQESKGTKWT PEENKQFENA LALYDKDTPD RWLKVAAMIP  60
GKTIGDVKKQ YKKLEEDVSD IEAGLIPISG YDNTSNNSFT LEWVNNQGFA GLKQFYSVGG  120
KRGTLIRPSD QERKKGVPWT EEEHRQFLMG LQKYGKGDWR NISRNFVTTR TPTQVASHAQ  180
KYFIRQLTGG KDKRRSSIHD ITTVNVPDTK PAPLLDGRRP PSPDHPVMVM QPLRRPKTAG  240
MDDRHEQYDW KPPYEATPMV FNPANGNIFV APFCGISSYG PKLQEQNLLG GTVPGSQFGH  300
YNTMFQMHPM QYQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1726102884RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018825920.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-107DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2I4F2P50.0A0A2I4F2P5_JUGRE; transcription factor DIVARICATA-like
STRINGPOPTR_0016s11980.11e-171(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-124MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]