PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00007493-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 546aa    MW: 61144.4 Da    PI: 6.9267
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00007493-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS456.91.2e-1391775462374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          + L+ cA+avs++d+ +aq+l+ +l++++s +g+p+qRl ay++e+L arla+s+s++y++l+++e +   s+e l+++++++ev+P++k
  WALNUT_00007493-RA 177 NHILILCAKAVSDNDMLMAQWLMDELRQMVSVTGEPIQRLGAYMLEGLVARLASSGSNIYQSLKCKEPA---SAELLSYMHILYEVCPYFK 264
                         799*****************************************************************9...9****************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                         f+++ aN aI ea++ e+rvHiiDf+i qG QW++L+qa+a+Rp+gpp++RiTg++++ s   +   l+ +g+rL++fA++++vpfef++ 
  WALNUT_00007493-RA 265 FGYMSANGAIAEAMKDENRVHIIDFQIAQGSQWLTLIQAFAARPGGPPHIRITGIDDSMSAyaRGGGLSIVGKRLSNFAKSFKVPFEFHA- 354
                         *********************************************************888789999************************. PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         +a +  +++l++L v++gEalaVn++++lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n++ F  rfle+l+yy+a+f+s++
  WALNUT_00007493-RA 355 AAMSGCQVQLRNLGVRSGEALAVNFAFMLHHMPDESVSTQNHRDRILRLVKSLSPKVVTLVEQESNTNTAAFYPRFLETLNYYTAMFESIN 445
                         89999************************************************************************************** PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                         ++lpr+s++ri+vE+++l+re+vn++aceg +r+erhe l+kWr+r+++aGF+p+pls+ +++++k+ll+++ +  yr+ee++++l+lgW+
  WALNUT_00007493-RA 446 VTLPRQSKKRINVEQHCLAREVVNIIACEGPDRVERHELLGKWRSRFKMAGFTPYPLSSLVNATIKTLLENYCD-KYRLEERDEALYLGWM 535
                         ************************************************************************95.5*************** PP

                GRAS 364 drpLvsvSaWr 374
                         +r Lv+ +aW+
  WALNUT_00007493-RA 536 NRDLVASCAWK 546
                         **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098570.15150527IPR005202Transcription factor GRAS
PfamPF035144.2E-137177546IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MQASQRHRSS GMSSGLYYQP VREVEAYCLP QFRAIDHQLH SNDGSQGTHF LAQNSYERYC  60
TLESSAKGNY AVYTSPSTVS FSPNGSPMSQ QDSQSCPADQ LHSPDNTCGS SISGSCITDE  120
VNDFKHKLKE LETVMMGPDC NFLDSYGCTF QNGTSNTSPA MDSWRQILEA ISNRDLNHIL  180
ILCAKAVSDN DMLMAQWLMD ELRQMVSVTG EPIQRLGAYM LEGLVARLAS SGSNIYQSLK  240
CKEPASAELL SYMHILYEVC PYFKFGYMSA NGAIAEAMKD ENRVHIIDFQ IAQGSQWLTL  300
IQAFAARPGG PPHIRITGID DSMSAYARGG GLSIVGKRLS NFAKSFKVPF EFHAAAMSGC  360
QVQLRNLGVR SGEALAVNFA FMLHHMPDES VSTQNHRDRI LRLVKSLSPK VVTLVEQESN  420
TNTAAFYPRF LETLNYYTAM FESINVTLPR QSKKRINVEQ HCLAREVVNI IACEGPDRVE  480
RHELLGKWRS RFKMAGFTPY PLSSLVNATI KTLLENYCDK YRLEERDEAL YLGWMNRDLV  540
ASCAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6418354526378Protein SCARECROW
5b3h_A1e-6418354525377Protein SCARECROW
5b3h_D1e-6418354525377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018849898.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_018849899.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_018849900.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_018849901.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2I4H1730.0A0A2I4H173_JUGRE; scarecrow-like transcription factor PAT1
STRINGEMJ167170.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]