PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00007485-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 392aa    MW: 42035 Da    PI: 9.5129
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00007485-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.86e-11295340655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++Ik Lq
  WALNUT_00007485-RA 295 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 340
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.005289339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-13292350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.58E-11293344No hitNo description
Gene3DG3DSA:4.10.280.101.5E-11294344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-8295340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-12295345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MYPPSSSPLS SQKPMGPTGL TRYCSAPGSL LSTAVDSVIG PNREFSPLRS SSSLMGHHQY  60
FSGDSSSVTS ESTCGANSSN GPPKQQQQLS KGLQRSYGLN EMAVSDFVTA SNLNGGGSSS  120
GSASSALVRQ RSSPAGFLSH LASSADNGFS VTRGSGGYTS QGGSNSGHGV SRLKSQLSFT  180
RQDSLSQISE VSEDVIDGIS SDNGHQNATY SYASTSFGMD SWDNTNSITF SAPPSKRAKN  240
LDGDIFNCLH TLETQFSMPQ TSLEMATVEK LIHIPEDSVP CKIRAKRGCA THPRSIAERE  300
RRTRISGKLK KLQDLVPNMD KQTSYADMLD LAVQHIKGLQ NKVQVGVPKW RFTKIFRIAP  360
VDANPLMFAD RKIVIERFCT GVKDVGPKLG SF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018815769.10.0PREDICTED: transcription factor bHLH128-like isoform X1
SwissprotQ8H1025e-88BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A2I4E8P90.0A0A2I4E8P9_JUGRE; transcription factor bHLH128-like isoform X1
STRINGXP_008380690.11e-156(Malus domestica)
STRINGcassava4.1_010829m1e-156(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-84bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]