PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00007386-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ZF-HD
Protein Properties Length: 353aa    MW: 39644.3 Da    PI: 8.5852
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00007386-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer106.41.7e-33122178359
         ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                         kvrY eClkNhAas+Ggh+vDGCgEfm+s geegt++alkCaAC+CHRnFHR+eve 
  WALNUT_00007386-RA 122 KVRYSECLKNHAASTGGHVVDGCGEFMSSAGEEGTPEALKCAACECHRNFHRKEVEG 178
                         79****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-20122178IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.7E-29123176IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.8E-31124176IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.046125175IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.6E-29279347IPR009057Homeodomain-like
SuperFamilySSF466897.98E-19281347IPR009057Homeodomain-like
PROSITE profilePS500718.681284348IPR001356Homeobox domain
TIGRFAMsTIGR015651.1E-27286343IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MELIRGGLDE DGRMPSTLSY NPSHTESTKL SSPILASAEG ERRRDPPVHG NAIVNPPQTL  60
EHPRLYLDQQ PDPHPHEQDT HKPRRDPDPN LDPVPALASS GQIKSPRTST STAIRASPNS  120
LKVRYSECLK NHAASTGGHV VDGCGEFMSS AGEEGTPEAL KCAACECHRN FHRKEVEGDS  180
QYVSNSTYYT NPNINNGKRS EIVRPPQHHP QLPPSLPHVY HHQHQYHKFP HVLPSTNPMV  240
GATLPMMMAF GGGGRVPAES SSEDLNMFRS NNIVGLRTSA QAQQSKKRFR TKFTQEQKDK  300
MTEFAEKLEW KIQKHDEQQV QQFCSEVGVK RQVFKVWMHN NKQAMKKSKS EEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-232853441675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018829480.10.0PREDICTED: zinc-finger homeodomain protein 6-like
SwissprotQ9ZPW71e-62ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A2I4FCV80.0A0A2I4FCV8_JUGRE; zinc-finger homeodomain protein 6-like
STRINGEOX910767e-96(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.13e-63homeobox protein 24