PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00007386-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ZF-HD | ||||||||
Protein Properties | Length: 353aa MW: 39644.3 Da PI: 8.5852 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 106.4 | 1.7e-33 | 122 | 178 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 kvrY eClkNhAas+Ggh+vDGCgEfm+s geegt++alkCaAC+CHRnFHR+eve WALNUT_00007386-RA 122 KVRYSECLKNHAASTGGHVVDGCGEFMSSAGEEGTPEALKCAACECHRNFHRKEVEG 178 79****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-20 | 122 | 178 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.7E-29 | 123 | 176 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 8.8E-31 | 124 | 176 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.046 | 125 | 175 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-29 | 279 | 347 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.98E-19 | 281 | 347 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.681 | 284 | 348 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 1.1E-27 | 286 | 343 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MELIRGGLDE DGRMPSTLSY NPSHTESTKL SSPILASAEG ERRRDPPVHG NAIVNPPQTL 60 EHPRLYLDQQ PDPHPHEQDT HKPRRDPDPN LDPVPALASS GQIKSPRTST STAIRASPNS 120 LKVRYSECLK NHAASTGGHV VDGCGEFMSS AGEEGTPEAL KCAACECHRN FHRKEVEGDS 180 QYVSNSTYYT NPNINNGKRS EIVRPPQHHP QLPPSLPHVY HHQHQYHKFP HVLPSTNPMV 240 GATLPMMMAF GGGGRVPAES SSEDLNMFRS NNIVGLRTSA QAQQSKKRFR TKFTQEQKDK 300 MTEFAEKLEW KIQKHDEQQV QQFCSEVGVK RQVFKVWMHN NKQAMKKSKS EEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 5e-23 | 285 | 344 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00268 | DAP | Transfer from AT2G18350 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018829480.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 6-like | ||||
Swissprot | Q9ZPW7 | 1e-62 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A2I4FCV8 | 0.0 | A0A2I4FCV8_JUGRE; zinc-finger homeodomain protein 6-like | ||||
STRING | EOX91076 | 7e-96 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 3e-63 | homeobox protein 24 |